JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RWDD2B_chr21_28999384_29024349	1/1	c0001	960	423	90	82	188	14	47	copy fasta	RWDD2B	chr21	28999384	29024349
RWDD2B_chr21_28999384_29024349	0/0	c0002	960	10	0	0	10	0	0	copy fasta	RWDD2B	chr21	28999384	29024349
RWDD2B_chr21_28999384_29024349	0/0	c0003	960	2	2	0	0	0	0	copy fasta	RWDD2B	chr21	28999384	29024349
RWDD2B_chr21_28999384_29024349	0/0	c0004	960	1	1	0	0	0	0	copy fasta	RWDD2B	chr21	28999384	29024349
RWDD2B_chr21_28999384_29024349	0/0	c0005	960	1	0	0	0	0	1	copy fasta	RWDD2B	chr21	28999384	29024349
RWDD2B_chr21_28999384_29024349	0/0	c0006	960	1	1	0	0	0	0	copy fasta	RWDD2B	chr21	28999384	29024349
RWDD3_chr1_95229210_95252225	0/1	c0001	804	329	59	61	163	11	34	copy fasta	RWDD3	chr1	95229210	95252225
RWDD3_chr1_95229210_95252225	0/0	c0002	804	91	25	17	43	3	3	copy fasta	RWDD3	chr1	95229210	95252225
RWDD3_chr1_95229210_95252225	1/0	c0003	804	7	6	0	0	0	0	copy fasta	RWDD3	chr1	95229210	95252225
RWDD3_chr1_95229210_95252225	0/0	c0004	804	2	0	2	0	0	0	copy fasta	RWDD3	chr1	95229210	95252225
RWDD3_chr1_95229210_95252225	0/0	c0005	804	1	0	0	0	0	1	copy fasta	RWDD3	chr1	95229210	95252225
RWDD4_chr4_183634635_183664185	1/0	c0001	567	288	32	52	163	13	27	copy fasta	RWDD4	chr4	183634635	183664185
RWDD4_chr4_183634635_183664185	0/1	c0002	567	94	15	21	39	3	15	copy fasta	RWDD4	chr4	183634635	183664185
RWDD4_chr4_183634635_183664185	0/0	c0003	567	56	18	6	27	0	5	copy fasta	RWDD4	chr4	183634635	183664185
RWDD4_chr4_183634635_183664185	0/0	c0004	567	20	18	2	0	0	0	copy fasta	RWDD4	chr4	183634635	183664185
RWDD4_chr4_183634635_183664185	0/0	c0005	567	12	12	0	0	0	0	copy fasta	RWDD4	chr4	183634635	183664185
RWDD4_chr4_183634635_183664185	0/0	c0006	567	6	5	1	0	0	0	copy fasta	RWDD4	chr4	183634635	183664185
RWDD4_chr4_183634635_183664185	0/0	c0007	567	1	0	0	0	0	1	copy fasta	RWDD4	chr4	183634635	183664185
RWDD4_chr4_183634635_183664185	0/0	c0008	567	1	0	0	1	0	0	copy fasta	RWDD4	chr4	183634635	183664185
RWDD4_chr4_183634635_183664185	0/0	c0009	567	1	0	0	0	0	1	copy fasta	RWDD4	chr4	183634635	183664185
RWDD4_chr4_183634635_183664185	0/0	c0010	567	1	0	0	0	0	1	copy fasta	RWDD4	chr4	183634635	183664185
RXFP1_chr4_158516882_158658372	1/1	c0001	2274	202	81	41	47	10	21	copy fasta	RXFP1	chr4	158516882	158658372
RXFP1_chr4_158516882_158658372	0/0	c0002	2274	3	0	0	0	0	3	copy fasta	RXFP1	chr4	158516882	158658372
RXFP1_chr4_158516882_158658372	0/0	c0003	2274	2	2	0	0	0	0	copy fasta	RXFP1	chr4	158516882	158658372
RXFP1_chr4_158516882_158658372	0/0	c0004	2274	1	0	1	0	0	0	copy fasta	RXFP1	chr4	158516882	158658372
RXFP1_chr4_158516882_158658372	0/0	c0005	2274	1	1	0	0	0	0	copy fasta	RXFP1	chr4	158516882	158658372
RXFP1_chr4_158516882_158658372	0/0	c0006	2274	1	0	0	1	0	0	copy fasta	RXFP1	chr4	158516882	158658372
RXFP2_chr13_31734526_31808389	0/1	c0001	2265	173	41	27	82	2	20	copy fasta	RXFP2	chr13	31734526	31808389
RXFP2_chr13_31734526_31808389	1/0	c0002	2265	126	38	20	50	2	15	copy fasta	RXFP2	chr13	31734526	31808389
RXFP2_chr13_31734526_31808389	0/0	c0003	2265	51	5	8	36	2	0	copy fasta	RXFP2	chr13	31734526	31808389
RXFP2_chr13_31734526_31808389	0/0	c0004	2265	23	0	0	20	2	1	copy fasta	RXFP2	chr13	31734526	31808389
RXFP2_chr13_31734526_31808389	0/0	c0005	2265	3	3	0	0	0	0	copy fasta	RXFP2	chr13	31734526	31808389
RXFP2_chr13_31734526_31808389	0/0	c0006	2265	1	0	1	0	0	0	copy fasta	RXFP2	chr13	31734526	31808389
RXFP2_chr13_31734526_31808389	0/0	c0007	2265	1	0	0	1	0	0	copy fasta	RXFP2	chr13	31734526	31808389
RXFP2_chr13_31734526_31808389	0/0	c0008	2265	1	0	1	0	0	0	copy fasta	RXFP2	chr13	31734526	31808389
RXFP2_chr13_31734526_31808389	0/0	c0009	2265	1	0	0	0	0	1	copy fasta	RXFP2	chr13	31734526	31808389
RXFP2_chr13_31734526_31808389	0/0	c0010	2265	1	0	0	0	0	1	copy fasta	RXFP2	chr13	31734526	31808389
RXFP2_chr13_31734526_31808389	0/0	c0011	2265	1	1	0	0	0	0	copy fasta	RXFP2	chr13	31734526	31808389
RXFP2_chr13_31734526_31808389	0/0	c0012	2265	1	1	0	0	0	0	copy fasta	RXFP2	chr13	31734526	31808389
RXFP2_chr13_31734526_31808389	0/0	c0013	2265	1	1	0	0	0	0	copy fasta	RXFP2	chr13	31734526	31808389
RXFP2_chr13_31734526_31808389	0/0	c0014	2265	1	0	0	1	0	0	copy fasta	RXFP2	chr13	31734526	31808389
RXFP2_chr13_31734526_31808389	0/0	c0015	2265	1	0	1	0	0	0	copy fasta	RXFP2	chr13	31734526	31808389
RXFP3_chr5_33931386_33943918	0/1	c0001	1410	417	76	70	215	10	45	copy fasta	RXFP3	chr5	33931386	33943918
RXFP3_chr5_33931386_33943918	0/0	c0002	1410	14	13	1	0	0	0	copy fasta	RXFP3	chr5	33931386	33943918
RXFP3_chr5_33931386_33943918	0/0	c0003	1410	6	6	0	0	0	0	copy fasta	RXFP3	chr5	33931386	33943918
RXFP3_chr5_33931386_33943918	0/0	c0004	1410	3	0	0	3	0	0	copy fasta	RXFP3	chr5	33931386	33943918
RXFP3_chr5_33931386_33943918	0/0	c0005	1410	2	0	0	2	0	0	copy fasta	RXFP3	chr5	33931386	33943918
RXFP3_chr5_33931386_33943918	0/0	c0006	1410	1	0	1	0	0	0	copy fasta	RXFP3	chr5	33931386	33943918
RXFP3_chr5_33931386_33943918	0/0	c0007	1410	1	0	0	0	0	1	copy fasta	RXFP3	chr5	33931386	33943918
RXFP3_chr5_33931386_33943918	0/0	c0008	1410	1	1	0	0	0	0	copy fasta	RXFP3	chr5	33931386	33943918