JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RXFP4_chr1_155936638_155948087	0/1	c0001	1125	260	62	44	112	12	29	copy fasta	RXFP4	chr1	155936638	155948087
RXFP4_chr1_155936638_155948087	1/0	c0002	1125	26	22	0	1	0	2	copy fasta	RXFP4	chr1	155936638	155948087
RXFP4_chr1_155936638_155948087	0/0	c0003	1125	18	1	0	14	0	3	copy fasta	RXFP4	chr1	155936638	155948087
RXFP4_chr1_155936638_155948087	0/0	c0004	1125	4	3	1	0	0	0	copy fasta	RXFP4	chr1	155936638	155948087
RXFP4_chr1_155936638_155948087	0/0	c0005	1125	2	0	0	2	0	0	copy fasta	RXFP4	chr1	155936638	155948087
RXFP4_chr1_155936638_155948087	0/0	c0006	1125	1	0	1	0	0	0	copy fasta	RXFP4	chr1	155936638	155948087
RXFP4_chr1_155936638_155948087	0/0	c0007	1125	1	0	0	1	0	0	copy fasta	RXFP4	chr1	155936638	155948087
RXRA_chr9_134321455_134445585	1/1	c0001	1389	227	83	51	57	8	26	copy fasta	RXRA	chr9	134321455	134445585
RXRA_chr9_134321455_134445585	0/0	c0002	1389	2	0	2	0	0	0	copy fasta	RXRA	chr9	134321455	134445585
RXRA_chr9_134321455_134445585	0/0	c0003	1389	1	0	1	0	0	0	copy fasta	RXRA	chr9	134321455	134445585
RXRA_chr9_134321455_134445585	0/0	c0004	1389	1	1	0	0	0	0	copy fasta	RXRA	chr9	134321455	134445585
RXRA_chr9_134321455_134445585	0/0	c0005	1389	1	0	0	1	0	0	copy fasta	RXRA	chr9	134321455	134445585
RXRB_chr6_33188588_33205665	0/0	c0001	1602	342	77	64	150	13	38	copy fasta	RXRB	chr6	33188588	33205665
RXRB_chr6_33188588_33205665	0/1	c0002	1602	32	7	11	5	3	5	copy fasta	RXRB	chr6	33188588	33205665
RXRB_chr6_33188588_33205665	0/0	c0003	1602	9	8	1	0	0	0	copy fasta	RXRB	chr6	33188588	33205665
RXRB_chr6_33188588_33205665	0/0	c0004	1602	4	2	0	1	0	1	copy fasta	RXRB	chr6	33188588	33205665
RXRB_chr6_33188588_33205665	0/0	c0005	1602	3	0	0	0	0	3	copy fasta	RXRB	chr6	33188588	33205665
RXRB_chr6_33188588_33205665	0/0	c0006	1602	1	0	0	0	0	1	copy fasta	RXRB	chr6	33188588	33205665
RXRG_chr1_165395922_165450126	1/0	c0001	1392	117	31	4	61	4	16	copy fasta	RXRG	chr1	165395922	165450126
RXRG_chr1_165395922_165450126	0/0	c0002	1392	110	38	19	49	0	4	copy fasta	RXRG	chr1	165395922	165450126
RXRG_chr1_165395922_165450126	0/1	c0003	1392	106	17	27	49	5	7	copy fasta	RXRG	chr1	165395922	165450126
RXRG_chr1_165395922_165450126	0/0	c0004	1392	58	2	20	16	5	15	copy fasta	RXRG	chr1	165395922	165450126
RXRG_chr1_165395922_165450126	0/0	c0005	1392	7	5	0	2	0	0	copy fasta	RXRG	chr1	165395922	165450126
RXRG_chr1_165395922_165450126	0/0	c0006	1392	7	3	0	2	0	2	copy fasta	RXRG	chr1	165395922	165450126
RXRG_chr1_165395922_165450126	0/0	c0007	1392	2	0	1	1	0	0	copy fasta	RXRG	chr1	165395922	165450126
RXRG_chr1_165395922_165450126	0/0	c0008	1392	1	0	0	0	0	1	copy fasta	RXRG	chr1	165395922	165450126
RXRG_chr1_165395922_165450126	0/0	c0009	1392	1	0	1	0	0	0	copy fasta	RXRG	chr1	165395922	165450126
RXRG_chr1_165395922_165450126	0/0	c0010	1392	1	0	0	0	0	1	copy fasta	RXRG	chr1	165395922	165450126
RXRG_chr1_165395922_165450126	0/0	c0011	1392	1	0	1	0	0	0	copy fasta	RXRG	chr1	165395922	165450126
RXRG_chr1_165395922_165450126	0/0	c0012	1392	1	0	1	0	0	0	copy fasta	RXRG	chr1	165395922	165450126
RXYLT1_chr12_63774909_63814562	1/1	c0001	1332	346	68	59	177	10	30	copy fasta	RXYLT1	chr12	63774909	63814562
RXYLT1_chr12_63774909_63814562	0/0	c0002	1332	13	1	4	3	2	3	copy fasta	RXYLT1	chr12	63774909	63814562
RXYLT1_chr12_63774909_63814562	0/0	c0003	1332	4	4	0	0	0	0	copy fasta	RXYLT1	chr12	63774909	63814562
RXYLT1_chr12_63774909_63814562	0/0	c0004	1332	3	3	0	0	0	0	copy fasta	RXYLT1	chr12	63774909	63814562
RXYLT1_chr12_63774909_63814562	0/0	c0005	1332	2	2	0	0	0	0	copy fasta	RXYLT1	chr12	63774909	63814562
RXYLT1_chr12_63774909_63814562	0/0	c0006	1332	1	0	1	0	0	0	copy fasta	RXYLT1	chr12	63774909	63814562
RXYLT1_chr12_63774909_63814562	0/0	c0007	1332	1	0	0	1	0	0	copy fasta	RXYLT1	chr12	63774909	63814562
RXYLT1_chr12_63774909_63814562	0/0	c0008	1332	1	0	0	1	0	0	copy fasta	RXYLT1	chr12	63774909	63814562
RXYLT1_chr12_63774909_63814562	0/0	c0009	1332	1	0	0	0	0	1	copy fasta	RXYLT1	chr12	63774909	63814562
RYK_chr3_134152133_134255859	1/0	c0001	1824	247	71	45	90	9	31	copy fasta	RYK	chr3	134152133	134255859
RYK_chr3_134152133_134255859	0/1	c0002	1824	105	7	14	76	3	4	copy fasta	RYK	chr3	134152133	134255859
RYK_chr3_134152133_134255859	0/0	c0003	1824	6	3	3	0	0	0	copy fasta	RYK	chr3	134152133	134255859
RYK_chr3_134152133_134255859	0/0	c0004	1830	3	3	0	0	0	0	copy fasta	RYK	chr3	134152133	134255859
RYK_chr3_134152133_134255859	0/0	c0005	1824	3	0	0	3	0	0	copy fasta	RYK	chr3	134152133	134255859
RYK_chr3_134152133_134255859	0/0	c0006	1824	2	2	0	0	0	0	copy fasta	RYK	chr3	134152133	134255859
RYK_chr3_134152133_134255859	0/0	c0007	1824	1	1	0	0	0	0	copy fasta	RYK	chr3	134152133	134255859
RYK_chr3_134152133_134255859	0/0	c0008	1824	1	0	0	0	0	1	copy fasta	RYK	chr3	134152133	134255859
RYK_chr3_134152133_134255859	0/0	c0009	1824	1	1	0	0	0	0	copy fasta	RYK	chr3	134152133	134255859
RYK_chr3_134152133_134255859	0/0	c0010	1824	1	0	1	0	0	0	copy fasta	RYK	chr3	134152133	134255859
RYK_chr3_134152133_134255859	0/0	c0011	1824	1	1	0	0	0	0	copy fasta	RYK	chr3	134152133	134255859