JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RYK_chr3_134152133_134255859	0/0	c0012	1824	1	1	0	0	0	0	copy fasta	RYK	chr3	134152133	134255859
RYK_chr3_134152133_134255859	0/0	c0013	1824	1	0	0	1	0	0	copy fasta	RYK	chr3	134152133	134255859
RYK_chr3_134152133_134255859	0/0	c0014	1824	1	0	0	1	0	0	copy fasta	RYK	chr3	134152133	134255859
RYK_chr3_134152133_134255859	0/0	c0015	1824	1	0	0	1	0	0	copy fasta	RYK	chr3	134152133	134255859
RYK_chr3_134152133_134255859	0/0	c0016	1824	1	0	1	0	0	0	copy fasta	RYK	chr3	134152133	134255859
RYR1_chr19_38428691_38592564	0/1	c0001	15117	34	8	13	5	1	6	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0002	15117	12	0	0	12	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0003	15117	6	2	2	2	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0004	15117	5	2	1	2	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0005	15117	5	2	3	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0006	15117	5	0	2	3	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0007	15117	4	4	0	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0008	15117	4	0	0	1	1	2	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0009	15117	3	0	0	0	0	3	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0010	15117	3	3	0	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0011	15117	3	3	0	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0012	15117	3	0	1	0	0	2	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0013	15117	3	0	0	3	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0014	15117	3	3	0	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0015	15117	3	3	0	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0016	15117	2	0	0	0	0	2	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0017	15117	2	0	0	2	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0018	15117	2	0	2	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0019	15117	2	0	0	1	0	1	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0020	15117	2	2	0	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0021	15114	2	0	0	0	0	2	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0022	15117	2	0	0	2	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0023	15117	2	0	0	1	0	1	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	1/0	c0024	15117	2	0	0	0	0	1	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0025	15117	2	0	0	0	0	2	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0026	15117	2	0	2	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0027	15117	2	0	2	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0028	15117	2	0	0	2	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0029	15117	2	0	0	2	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0030	15117	2	0	0	2	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0031	15117	1	0	0	1	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0032	15117	1	0	0	1	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0033	15117	1	0	1	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0034	15117	1	0	0	1	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0035	15117	1	0	0	1	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0036	15117	1	0	0	0	0	1	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0037	15117	1	1	0	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0038	15117	1	1	0	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0039	15117	1	1	0	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0040	15117	1	0	0	0	0	1	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0041	15117	1	1	0	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0042	15117	1	0	1	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0043	15117	1	1	0	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0044	15117	1	0	1	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0045	15117	1	0	0	0	0	1	copy fasta	RYR1	chr19	38428691	38592564