JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	SAS	cseq	genename	chr	start	end
RYR1_chr19_38428691_38592564	0/0	c0046	15117	1	0	0	0	1	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0047	15117	1	1	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0048	15117	1	0	1	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0049	15117	1	0	0	1	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0050	15117	1	0	0	1	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0051	15117	1	0	0	1	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0052	15117	1	0	0	1	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0053	15117	1	0	0	0	1	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0054	15117	1	1	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0055	15117	1	1	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0056	15117	1	1	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0057	15117	1	1	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0058	15117	1	1	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0059	15117	1	1	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0060	15117	1	0	0	0	1	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0061	15117	1	0	0	1	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0062	15117	1	0	1	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0063	15117	1	0	1	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0064	15117	1	0	0	0	1	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0065	15117	1	0	0	0	1	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0066	15117	1	0	0	1	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0067	15117	1	0	1	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0068	15117	1	1	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0069	15117	1	1	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0070	15117	1	1	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0071	15117	1	1	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0072	15117	1	0	1	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0073	15117	1	1	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0074	15117	1	0	0	0	1	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0075	15117	1	0	1	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0076	15117	1	0	0	0	1	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0077	15117	1	0	1	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0078	15117	1	0	0	0	1	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0079	15117	1	0	1	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0080	15117	1	1	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0081	15117	1	1	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0082	15117	1	1	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0083	15117	1	1	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0084	15117	1	1	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0085	15117	1	0	0	1	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0086	15117	1	1	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0087	15117	1	1	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0088	15117	1	0	0	0	1	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0089	15117	1	0	0	1	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0090	15117	1	1	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0091	15117	1	0	0	1	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0092	15117	1	0	0	1	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0093	15117	1	0	0	1	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0094	15117	1	0	1	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0095	15117	1	0	0	1	0	copy fasta	RYR1	chr19	38428691	38592564