JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RYR1_chr19_38428691_38592564	0/0	c0096	15117	1	0	1	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0097	15117	1	0	0	1	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0098	15117	1	0	1	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0099	15117	1	0	0	1	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0100	15117	1	0	1	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0101	15117	1	0	1	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0102	15117	1	0	0	1	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0103	15117	1	0	0	1	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0104	15117	1	0	1	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0105	15117	1	0	1	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0106	15117	1	1	0	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0107	15117	1	0	1	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0108	15117	1	1	0	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0109	15117	1	1	0	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0110	15117	1	1	0	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0111	15117	1	0	1	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0112	15117	1	0	0	1	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0113	15117	1	0	0	1	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0114	15117	1	0	0	1	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0115	15117	1	1	0	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0116	15117	1	0	0	1	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0117	15117	1	0	0	1	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0118	15117	1	0	0	1	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0119	15117	1	0	1	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0120	15117	1	0	0	1	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0121	15117	1	0	0	1	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	c0122	15117	1	0	1	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR2_chr1_237037184_237838988	0/0	c0001	14904	12	7	3	0	0	2	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	c0002	14904	10	4	3	0	1	2	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	c0003	14904	9	0	5	1	0	3	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	c0004	14904	7	1	2	4	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	c0005	14904	4	2	1	1	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	c0006	14904	4	0	4	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	c0007	14904	4	1	0	2	0	1	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	c0008	14904	3	2	0	1	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	c0009	14904	3	0	1	2	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	c0010	14904	2	2	0	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	c0011	14904	2	2	0	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	c0012	14904	2	0	1	1	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	c0013	14904	2	0	2	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	c0014	14904	1	1	0	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	c0015	14904	1	1	0	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	c0016	14904	1	1	0	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	c0017	14904	1	0	1	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	c0018	14904	1	1	0	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	c0019	14904	1	1	0	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	c0020	14904	1	0	0	0	0	1	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	c0021	14904	1	0	1	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	c0022	14904	1	0	1	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	c0023	14904	1	0	1	0	0	0	copy fasta	RYR2	chr1	237037184	237838988