JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ATG16L1_chr2_233246673_233300669	0/0	c0008	1824	1	0	0	1	0	0	copy fasta	ATG16L1	chr2	233246673	233300669
ATG16L1_chr2_233246673_233300669	0/0	c0009	1824	1	0	0	0	0	1	copy fasta	ATG16L1	chr2	233246673	233300669
ATG16L2_chr11_72809411_72834635	1/1	c0001	1860	407	87	81	173	18	46	copy fasta	ATG16L2	chr11	72809411	72834635
ATG16L2_chr11_72809411_72834635	0/0	c0002	1860	20	0	0	20	0	0	copy fasta	ATG16L2	chr11	72809411	72834635
ATG16L2_chr11_72809411_72834635	0/0	c0003	1860	6	6	0	0	0	0	copy fasta	ATG16L2	chr11	72809411	72834635
ATG16L2_chr11_72809411_72834635	0/0	c0004	1860	3	0	0	3	0	0	copy fasta	ATG16L2	chr11	72809411	72834635
ATG16L2_chr11_72809411_72834635	0/0	c0005	1860	1	0	0	1	0	0	copy fasta	ATG16L2	chr11	72809411	72834635
ATG16L2_chr11_72809411_72834635	0/0	c0006	1860	1	1	0	0	0	0	copy fasta	ATG16L2	chr11	72809411	72834635
ATG16L2_chr11_72809411_72834635	0/0	c0007	1878	1	0	1	0	0	0	copy fasta	ATG16L2	chr11	72809411	72834635
ATG16L2_chr11_72809411_72834635	0/0	c0008	1860	1	0	0	1	0	0	copy fasta	ATG16L2	chr11	72809411	72834635
ATG2A_chr11_64889546_64922209	0/1	c0001	5817	142	26	31	57	7	20	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	c0002	5817	112	11	21	58	5	17	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	c0003	5817	9	7	2	0	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	c0004	5817	9	8	1	0	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	c0005	5817	8	0	0	8	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	c0006	5817	7	0	0	7	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	c0007	5817	6	6	0	0	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	c0008	5817	6	0	0	6	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	c0009	5817	5	5	0	0	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	c0010	5817	5	0	0	5	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	c0011	5817	4	4	0	0	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	c0012	5817	4	0	0	4	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	c0013	5817	4	1	2	0	1	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	c0014	5817	3	3	0	0	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	1/0	c0015	5817	3	2	0	0	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	c0016	5817	3	3	0	0	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	c0017	5817	3	0	0	3	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	c0018	5817	3	0	0	3	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	c0019	5817	2	2	0	0	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	c0020	5817	2	0	0	2	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	c0021	5817	2	0	0	2	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	c0022	5817	2	0	0	2	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	c0023	5817	2	0	0	2	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	c0024	5817	2	2	0	0	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	c0025	5817	1	1	0	0	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	c0026	5817	1	1	0	0	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	c0027	5817	1	0	0	1	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	c0028	5817	1	0	1	0	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	c0029	5817	1	1	0	0	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	c0030	5817	1	0	1	0	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	c0031	5817	1	0	1	0	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	c0032	5817	1	1	0	0	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	c0033	5817	1	1	0	0	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	c0034	5817	1	1	0	0	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	c0035	5817	1	0	0	0	0	1	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	c0036	5831	1	0	0	1	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	c0037	5817	1	0	1	0	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	c0038	5817	1	0	0	1	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	c0039	5817	1	0	0	0	1	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	c0040	5817	1	0	0	1	0	0	copy fasta	ATG2A	chr11	64889546	64922209