JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RYR2_chr1_237037184_237838988	0/0	c0024	14904	1	0	1	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	c0025	14904	1	1	0	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	c0026	14904	1	1	0	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	c0027	14904	1	0	0	0	0	1	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	c0028	14904	1	1	0	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	c0029	14904	1	0	1	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	c0030	14904	1	0	1	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	c0031	14904	1	1	0	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	c0032	14904	1	0	1	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	c0033	14904	1	0	0	1	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	c0034	14904	1	1	0	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	c0035	14904	1	1	0	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	c0036	14904	1	0	0	1	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	c0037	14904	1	1	0	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	c0038	14904	1	1	0	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	c0039	14904	1	0	1	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	c0040	14904	1	1	0	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	c0041	14904	1	0	1	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	c0042	14904	1	0	1	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	c0043	14904	1	0	1	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	c0044	14904	1	0	0	0	1	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	c0045	14904	1	1	0	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	c0046	14904	1	1	0	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	c0047	14904	1	1	0	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	c0048	14904	1	1	0	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	c0049	14904	1	1	0	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR3_chr15_33305967_33871102	0/0	c0001	14613	7	0	0	7	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	c0002	14613	4	0	0	4	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	c0003	14613	4	0	2	2	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	c0004	14613	4	0	1	1	1	1	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	c0005	14613	3	0	1	2	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	c0006	14613	3	0	0	3	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	c0007	14613	2	0	0	2	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	c0008	14613	2	2	0	0	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	c0009	14613	2	0	0	2	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	c0010	14613	2	2	0	0	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	c0011	14613	2	0	2	0	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	c0012	14613	2	2	0	0	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	c0013	14613	2	0	0	2	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	c0014	14613	2	2	0	0	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/1	c0015	14613	2	0	1	0	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	c0016	14613	2	0	0	2	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	c0017	14610	2	0	1	1	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	c0018	14613	1	0	0	1	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	c0019	14613	1	0	0	1	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	c0020	14613	1	1	0	0	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	c0021	14613	1	1	0	0	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	c0022	14613	1	1	0	0	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	c0023	14613	1	1	0	0	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	c0024	14613	1	1	0	0	0	0	copy fasta	RYR3	chr15	33305967	33871102