JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
S100A10_chr1_151977915_151998859	1/1	c0001	294	383	86	70	167	16	42	copy fasta	S100A10	chr1	151977915	151998859
S100A10_chr1_151977915_151998859	0/0	c0002	294	4	4	0	0	0	0	copy fasta	S100A10	chr1	151977915	151998859
S100A10_chr1_151977915_151998859	0/0	c0003	294	3	2	0	1	0	0	copy fasta	S100A10	chr1	151977915	151998859
S100A11_chr1_152027506_152042004	1/1	c0001	318	359	89	69	137	16	46	copy fasta	S100A11	chr1	152027506	152042004
S100A11_chr1_152027506_152042004	0/0	c0002	318	1	0	1	0	0	0	copy fasta	S100A11	chr1	152027506	152042004
S100A11_chr1_152027506_152042004	0/0	c0003	318	1	1	0	0	0	0	copy fasta	S100A11	chr1	152027506	152042004
S100A11_chr1_152027506_152042004	0/0	c0004	318	1	0	0	1	0	0	copy fasta	S100A11	chr1	152027506	152042004
S100A12_chr1_153368711_153380621	1/1	c0001	279	365	87	80	152	12	32	copy fasta	S100A12	chr1	153368711	153380621
S100A12_chr1_153368711_153380621	0/0	c0002	279	1	1	0	0	0	0	copy fasta	S100A12	chr1	153368711	153380621
S100A13_chr1_153613799_153632505	1/1	c0001	297	369	96	62	148	13	48	copy fasta	S100A13	chr1	153613799	153632505
S100A13_chr1_153613799_153632505	0/0	c0002	297	2	0	2	0	0	0	copy fasta	S100A13	chr1	153613799	153632505
S100A13_chr1_153613799_153632505	0/0	c0003	297	2	0	1	0	1	0	copy fasta	S100A13	chr1	153613799	153632505
S100A13_chr1_153613799_153632505	0/0	c0004	297	1	0	1	0	0	0	copy fasta	S100A13	chr1	153613799	153632505
S100A14_chr1_153609255_153621325	1/1	c0001	315	394	94	70	166	14	48	copy fasta	S100A14	chr1	153609255	153621325
S100A16_chr1_153601886_153618137	1/1	c0001	312	394	96	72	166	12	46	copy fasta	S100A16	chr1	153601886	153618137
S100A16_chr1_153601886_153618137	0/0	c0002	312	3	0	0	3	0	0	copy fasta	S100A16	chr1	153601886	153618137
S100A16_chr1_153601886_153618137	0/0	c0003	312	2	0	0	0	0	2	copy fasta	S100A16	chr1	153601886	153618137
S100A16_chr1_153601886_153618137	0/0	c0004	312	1	0	0	1	0	0	copy fasta	S100A16	chr1	153601886	153618137
S100A1_chr1_153623434_153637039	1/1	c0001	285	376	94	70	153	14	43	copy fasta	S100A1	chr1	153623434	153637039
S100A1_chr1_153623434_153637039	0/0	c0002	285	1	0	0	1	0	0	copy fasta	S100A1	chr1	153623434	153637039
S100A1_chr1_153623434_153637039	0/0	c0003	285	1	0	0	0	0	1	copy fasta	S100A1	chr1	153623434	153637039
S100A2_chr1_153556108_153570844	1/1	c0001	297	311	41	72	138	14	44	copy fasta	S100A2	chr1	153556108	153570844
S100A2_chr1_153556108_153570844	0/0	c0002	297	55	47	2	2	0	4	copy fasta	S100A2	chr1	153556108	153570844
S100A2_chr1_153556108_153570844	0/0	c0003	297	4	0	4	0	0	0	copy fasta	S100A2	chr1	153556108	153570844
S100A3_chr1_153542329_153554258	1/1	c0001	306	251	52	54	94	16	33	copy fasta	S100A3	chr1	153542329	153554258
S100A3_chr1_153542329_153554258	0/0	c0002	306	45	34	4	2	0	5	copy fasta	S100A3	chr1	153542329	153554258
S100A3_chr1_153542329_153554258	0/0	c0003	306	2	2	0	0	0	0	copy fasta	S100A3	chr1	153542329	153554258
S100A3_chr1_153542329_153554258	0/0	c0004	306	2	2	0	0	0	0	copy fasta	S100A3	chr1	153542329	153554258
S100A3_chr1_153542329_153554258	0/0	c0005	306	2	2	0	0	0	0	copy fasta	S100A3	chr1	153542329	153554258
S100A3_chr1_153542329_153554258	0/0	c0006	306	1	1	0	0	0	0	copy fasta	S100A3	chr1	153542329	153554258
S100A3_chr1_153542329_153554258	0/0	c0007	306	1	1	0	0	0	0	copy fasta	S100A3	chr1	153542329	153554258
S100A3_chr1_153542329_153554258	0/0	c0008	306	1	0	1	0	0	0	copy fasta	S100A3	chr1	153542329	153554258
S100A3_chr1_153542329_153554258	0/0	c0009	306	1	0	1	0	0	0	copy fasta	S100A3	chr1	153542329	153554258
S100A4_chr1_153538621_153550806	1/1	c0001	306	299	53	66	130	16	32	copy fasta	S100A4	chr1	153538621	153550806
S100A4_chr1_153538621_153550806	0/0	c0002	306	35	25	4	2	0	4	copy fasta	S100A4	chr1	153538621	153550806
S100A4_chr1_153538621_153550806	0/0	c0003	306	8	8	0	0	0	0	copy fasta	S100A4	chr1	153538621	153550806
S100A4_chr1_153538621_153550806	0/0	c0004	306	3	3	0	0	0	0	copy fasta	S100A4	chr1	153538621	153550806
S100A4_chr1_153538621_153550806	0/0	c0005	306	3	3	0	0	0	0	copy fasta	S100A4	chr1	153538621	153550806
S100A4_chr1_153538621_153550806	0/0	c0006	306	2	2	0	0	0	0	copy fasta	S100A4	chr1	153538621	153550806
S100A5_chr1_153532147_153545934	1/1	c0001	279	267	66	54	100	16	29	copy fasta	S100A5	chr1	153532147	153545934
S100A5_chr1_153532147_153545934	0/0	c0002	279	51	0	10	38	0	3	copy fasta	S100A5	chr1	153532147	153545934
S100A5_chr1_153532147_153545934	0/0	c0003	279	43	17	5	13	2	6	copy fasta	S100A5	chr1	153532147	153545934
S100A5_chr1_153532147_153545934	0/0	c0004	279	11	10	1	0	0	0	copy fasta	S100A5	chr1	153532147	153545934
S100A5_chr1_153532147_153545934	0/0	c0005	279	5	0	0	5	0	0	copy fasta	S100A5	chr1	153532147	153545934
S100A5_chr1_153532147_153545934	0/0	c0006	279	1	1	0	0	0	0	copy fasta	S100A5	chr1	153532147	153545934
S100A6_chr1_153529599_153540991	1/1	c0001	273	378	93	66	166	12	39	copy fasta	S100A6	chr1	153529599	153540991
S100A6_chr1_153529599_153540991	0/0	c0002	273	1	1	0	0	0	0	copy fasta	S100A6	chr1	153529599	153540991
S100A6_chr1_153529599_153540991	0/0	c0003	273	1	0	0	0	0	1	copy fasta	S100A6	chr1	153529599	153540991
S100A7A_chr1_153411520_153428222	1/1	c0001	306	305	48	58	147	9	41	copy fasta	S100A7A	chr1	153411520	153428222
S100A7A_chr1_153411520_153428222	0/0	c0002	306	81	39	12	27	1	2	copy fasta	S100A7A	chr1	153411520	153428222