JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
S100A7A_chr1_153411520_153428222	0/0	c0003	306	16	0	9	7	0	0	copy fasta	S100A7A	chr1	153411520	153428222
S100A7A_chr1_153411520_153428222	0/0	c0004	306	7	7	0	0	0	0	copy fasta	S100A7A	chr1	153411520	153428222
S100A7A_chr1_153411520_153428222	0/0	c0005	306	4	0	0	4	0	0	copy fasta	S100A7A	chr1	153411520	153428222
S100A7A_chr1_153411520_153428222	0/0	c0006	306	2	0	2	0	0	0	copy fasta	S100A7A	chr1	153411520	153428222
S100A7A_chr1_153411520_153428222	0/0	c0007	306	2	0	1	1	0	0	copy fasta	S100A7A	chr1	153411520	153428222
S100A7A_chr1_153411520_153428222	0/0	c0008	306	1	0	0	1	0	0	copy fasta	S100A7A	chr1	153411520	153428222
S100A7A_chr1_153411520_153428222	0/0	c0009	306	1	1	0	0	0	0	copy fasta	S100A7A	chr1	153411520	153428222
S100A7A_chr1_153411520_153428222	0/0	c0010	306	1	0	0	1	0	0	copy fasta	S100A7A	chr1	153411520	153428222
S100A7A_chr1_153411520_153428222	0/0	c0011	306	1	1	0	0	0	0	copy fasta	S100A7A	chr1	153411520	153428222
S100A7A_chr1_153411520_153428222	0/0	c0012	306	1	0	0	0	0	1	copy fasta	S100A7A	chr1	153411520	153428222
S100A7_chr1_153452744_153465651	0/1	c0001	306	412	93	78	192	14	34	copy fasta	S100A7	chr1	153452744	153465651
S100A7_chr1_153452744_153465651	0/0	c0002	306	3	0	0	3	0	0	copy fasta	S100A7	chr1	153452744	153465651
S100A7_chr1_153452744_153465651	1/0	c0003	306	3	0	0	0	0	2	copy fasta	S100A7	chr1	153452744	153465651
S100A7_chr1_153452744_153465651	0/0	c0004	306	1	0	0	1	0	0	copy fasta	S100A7	chr1	153452744	153465651
S100A7_chr1_153452744_153465651	0/0	c0005	306	1	1	0	0	0	0	copy fasta	S100A7	chr1	153452744	153465651
S100A8_chr1_153385032_153396073	1/1	c0001	282	316	83	70	109	14	38	copy fasta	S100A8	chr1	153385032	153396073
S100A8_chr1_153385032_153396073	0/0	c0002	282	5	5	0	0	0	0	copy fasta	S100A8	chr1	153385032	153396073
S100A8_chr1_153385032_153396073	0/0	c0003	282	1	0	0	1	0	0	copy fasta	S100A8	chr1	153385032	153396073
S100A9_chr1_153352854_153366023	1/1	c0001	345	453	95	84	207	17	48	copy fasta	S100A9	chr1	153352854	153366023
S100A9_chr1_153352854_153366023	0/0	c0002	345	4	0	0	4	0	0	copy fasta	S100A9	chr1	153352854	153366023
S100A9_chr1_153352854_153366023	0/0	c0003	345	3	3	0	0	0	0	copy fasta	S100A9	chr1	153352854	153366023
S100A9_chr1_153352854_153366023	0/0	c0004	345	1	0	0	1	0	0	copy fasta	S100A9	chr1	153352854	153366023
S100A9_chr1_153352854_153366023	0/0	c0005	345	1	0	0	0	1	0	copy fasta	S100A9	chr1	153352854	153366023
S100B_chr21_46593604_46610082	0/0	c0001	279	257	38	52	123	15	29	copy fasta	S100B	chr21	46593604	46610082
S100B_chr21_46593604_46610082	1/1	c0002	279	195	56	28	87	3	19	copy fasta	S100B	chr21	46593604	46610082
S100G_chrX_16645158_16659670	1/1	c0001	240	348	80	64	159	11	32	copy fasta	S100G	chrX	16645158	16659670
S100PBP_chr1_32812653_32863875	1/1	c0001	1227	330	80	65	125	16	42	copy fasta	S100PBP	chr1	32812653	32863875
S100PBP_chr1_32812653_32863875	0/0	c0002	1227	4	3	1	0	0	0	copy fasta	S100PBP	chr1	32812653	32863875
S100PBP_chr1_32812653_32863875	0/0	c0003	1227	3	3	0	0	0	0	copy fasta	S100PBP	chr1	32812653	32863875
S100PBP_chr1_32812653_32863875	0/0	c0004	1227	2	0	0	2	0	0	copy fasta	S100PBP	chr1	32812653	32863875
S100PBP_chr1_32812653_32863875	0/0	c0005	1227	1	0	0	1	0	0	copy fasta	S100PBP	chr1	32812653	32863875
S100P_chr4_6688878_6702170	0/1	c0001	288	455	85	80	226	17	46	copy fasta	S100P	chr4	6688878	6702170
S100P_chr4_6688878_6702170	0/0	c0002	288	11	1	6	0	1	3	copy fasta	S100P	chr4	6688878	6702170
S100P_chr4_6688878_6702170	0/0	c0003	288	9	9	0	0	0	0	copy fasta	S100P	chr4	6688878	6702170
S100P_chr4_6688878_6702170	1/0	c0004	288	6	5	0	0	0	0	copy fasta	S100P	chr4	6688878	6702170
S100P_chr4_6688878_6702170	0/0	c0005	288	1	0	0	0	0	1	copy fasta	S100P	chr4	6688878	6702170
S100Z_chr5_76845014_76926650	0/0	c0001	300	174	48	40	61	8	17	copy fasta	S100Z	chr5	76845014	76926650
S100Z_chr5_76845014_76926650	1/1	c0002	300	173	44	24	74	4	25	copy fasta	S100Z	chr5	76845014	76926650
S100Z_chr5_76845014_76926650	0/0	c0003	300	1	0	0	1	0	0	copy fasta	S100Z	chr5	76845014	76926650
S1PR1_chr1_101232019_101246518	1/1	c0001	1149	441	82	69	220	18	50	copy fasta	S1PR1	chr1	101232019	101246518
S1PR1_chr1_101232019_101246518	0/0	c0002	1149	12	12	0	0	0	0	copy fasta	S1PR1	chr1	101232019	101246518
S1PR1_chr1_101232019_101246518	0/0	c0003	1149	2	0	2	0	0	0	copy fasta	S1PR1	chr1	101232019	101246518
S1PR1_chr1_101232019_101246518	0/0	c0004	1149	1	0	1	0	0	0	copy fasta	S1PR1	chr1	101232019	101246518
S1PR2_chr19_10216433_10236331	1/0	c0001	1062	210	27	37	123	6	16	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/1	c0002	1062	169	49	33	59	8	19	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	c0003	1062	6	6	0	0	0	0	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	c0004	1062	5	3	2	0	0	0	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	c0005	1062	2	0	2	0	0	0	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	c0006	1062	1	0	0	1	0	0	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	c0007	1062	1	0	0	0	0	1	copy fasta	S1PR2	chr19	10216433	10236331