JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
S1PR2_chr19_10216433_10236331	0/0	c0008	1062	1	1	0	0	0	0	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	c0009	1062	1	0	0	1	0	0	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	c0010	1062	1	0	0	1	0	0	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	c0011	1062	1	0	0	1	0	0	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	c0012	1062	1	0	1	0	0	0	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	c0013	1062	1	0	1	0	0	0	copy fasta	S1PR2	chr19	10216433	10236331
S1PR3_chr9_88986468_89010155	1/1	c0001	1137	372	85	74	150	15	46	copy fasta	S1PR3	chr9	88986468	89010155
S1PR3_chr9_88986468_89010155	0/0	c0002	1137	10	8	2	0	0	0	copy fasta	S1PR3	chr9	88986468	89010155
S1PR3_chr9_88986468_89010155	0/0	c0003	1137	7	0	5	0	0	2	copy fasta	S1PR3	chr9	88986468	89010155
S1PR3_chr9_88986468_89010155	0/0	c0004	1137	4	0	0	4	0	0	copy fasta	S1PR3	chr9	88986468	89010155
S1PR3_chr9_88986468_89010155	0/0	c0005	1137	3	3	0	0	0	0	copy fasta	S1PR3	chr9	88986468	89010155
S1PR3_chr9_88986468_89010155	0/0	c0006	1137	1	0	0	1	0	0	copy fasta	S1PR3	chr9	88986468	89010155
S1PR3_chr9_88986468_89010155	0/0	c0007	1137	1	0	1	0	0	0	copy fasta	S1PR3	chr9	88986468	89010155
S1PR3_chr9_88986468_89010155	0/0	c0008	1137	1	0	0	1	0	0	copy fasta	S1PR3	chr9	88986468	89010155
S1PR3_chr9_88986468_89010155	0/0	c0009	1137	1	0	0	0	1	0	copy fasta	S1PR3	chr9	88986468	89010155
S1PR3_chr9_88986468_89010155	0/0	c0010	1137	1	1	0	0	0	0	copy fasta	S1PR3	chr9	88986468	89010155
S1PR3_chr9_88986468_89010155	0/0	c0011	1137	1	1	0	0	0	0	copy fasta	S1PR3	chr9	88986468	89010155
S1PR4_chr19_3173769_3185332	1/1	c0001	1155	376	83	70	165	13	43	copy fasta	S1PR4	chr19	3173769	3185332
S1PR4_chr19_3173769_3185332	0/0	c0002	1155	8	8	0	0	0	0	copy fasta	S1PR4	chr19	3173769	3185332
S1PR4_chr19_3173769_3185332	0/0	c0003	1155	5	0	3	0	1	1	copy fasta	S1PR4	chr19	3173769	3185332
S1PR4_chr19_3173769_3185332	0/0	c0004	1155	5	0	0	5	0	0	copy fasta	S1PR4	chr19	3173769	3185332
S1PR4_chr19_3173769_3185332	0/0	c0005	1155	4	0	0	4	0	0	copy fasta	S1PR4	chr19	3173769	3185332
S1PR4_chr19_3173769_3185332	0/0	c0006	1155	2	0	0	0	1	1	copy fasta	S1PR4	chr19	3173769	3185332
S1PR4_chr19_3173769_3185332	0/0	c0007	1155	2	1	0	1	0	0	copy fasta	S1PR4	chr19	3173769	3185332
S1PR4_chr19_3173769_3185332	0/0	c0008	1155	2	0	2	0	0	0	copy fasta	S1PR4	chr19	3173769	3185332
S1PR4_chr19_3173769_3185332	0/0	c0009	1155	1	0	0	1	0	0	copy fasta	S1PR4	chr19	3173769	3185332
S1PR4_chr19_3173769_3185332	0/0	c0010	1155	1	0	0	1	0	0	copy fasta	S1PR4	chr19	3173769	3185332
S1PR4_chr19_3173769_3185332	0/0	c0011	1155	1	1	0	0	0	0	copy fasta	S1PR4	chr19	3173769	3185332
S1PR4_chr19_3173769_3185332	0/0	c0012	1155	1	0	0	1	0	0	copy fasta	S1PR4	chr19	3173769	3185332
S1PR4_chr19_3173769_3185332	0/0	c0013	1155	1	0	0	1	0	0	copy fasta	S1PR4	chr19	3173769	3185332
S1PR4_chr19_3173769_3185332	0/0	c0014	1155	1	1	0	0	0	0	copy fasta	S1PR4	chr19	3173769	3185332
S1PR4_chr19_3173769_3185332	0/0	c0015	1155	1	0	1	0	0	0	copy fasta	S1PR4	chr19	3173769	3185332
S1PR4_chr19_3173769_3185332	0/0	c0016	1155	1	0	0	1	0	0	copy fasta	S1PR4	chr19	3173769	3185332
S1PR4_chr19_3173769_3185332	0/0	c0017	1155	1	1	0	0	0	0	copy fasta	S1PR4	chr19	3173769	3185332
S1PR4_chr19_3173769_3185332	0/0	c0018	1155	1	0	0	1	0	0	copy fasta	S1PR4	chr19	3173769	3185332
S1PR4_chr19_3173769_3185332	0/0	c0019	1155	1	0	0	1	0	0	copy fasta	S1PR4	chr19	3173769	3185332
S1PR4_chr19_3173769_3185332	0/0	c0020	1155	1	1	0	0	0	0	copy fasta	S1PR4	chr19	3173769	3185332
S1PR4_chr19_3173769_3185332	0/0	c0021	1155	1	0	0	0	1	0	copy fasta	S1PR4	chr19	3173769	3185332
S1PR4_chr19_3173769_3185332	0/0	c0022	1155	1	0	0	0	0	1	copy fasta	S1PR4	chr19	3173769	3185332
S1PR5_chr19_10507742_10522447	0/0	c0001	1197	332	61	63	154	15	39	copy fasta	S1PR5	chr19	10507742	10522447
S1PR5_chr19_10507742_10522447	1/1	c0002	1197	85	19	12	46	3	3	copy fasta	S1PR5	chr19	10507742	10522447
S1PR5_chr19_10507742_10522447	0/0	c0003	1197	6	6	0	0	0	0	copy fasta	S1PR5	chr19	10507742	10522447
S1PR5_chr19_10507742_10522447	0/0	c0004	1197	6	0	1	1	0	4	copy fasta	S1PR5	chr19	10507742	10522447
S1PR5_chr19_10507742_10522447	0/0	c0005	1197	5	0	0	5	0	0	copy fasta	S1PR5	chr19	10507742	10522447
S1PR5_chr19_10507742_10522447	0/0	c0006	1197	5	5	0	0	0	0	copy fasta	S1PR5	chr19	10507742	10522447
S1PR5_chr19_10507742_10522447	0/0	c0007	1197	3	3	0	0	0	0	copy fasta	S1PR5	chr19	10507742	10522447
S1PR5_chr19_10507742_10522447	0/0	c0008	1197	1	0	0	1	0	0	copy fasta	S1PR5	chr19	10507742	10522447
S1PR5_chr19_10507742_10522447	0/0	c0009	1197	1	0	0	1	0	0	copy fasta	S1PR5	chr19	10507742	10522447
S1PR5_chr19_10507742_10522447	0/0	c0010	1197	1	1	0	0	0	0	copy fasta	S1PR5	chr19	10507742	10522447
S1PR5_chr19_10507742_10522447	0/0	c0011	1197	1	1	0	0	0	0	copy fasta	S1PR5	chr19	10507742	10522447