JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SAA1_chr11_18261264_18274967	0/1	c0001	369	131	31	23	58	2	16	copy fasta	SAA1	chr11	18261264	18274967
SAA1_chr11_18261264_18274967	0/0	c0002	369	120	0	37	61	8	14	copy fasta	SAA1	chr11	18261264	18274967
SAA1_chr11_18261264_18274967	0/0	c0003	369	84	3	5	69	1	6	copy fasta	SAA1	chr11	18261264	18274967
SAA1_chr11_18261264_18274967	0/0	c0004	369	44	31	8	0	3	2	copy fasta	SAA1	chr11	18261264	18274967
SAA1_chr11_18261264_18274967	0/0	c0005	369	15	12	3	0	0	0	copy fasta	SAA1	chr11	18261264	18274967
SAA1_chr11_18261264_18274967	0/0	c0006	369	12	11	1	0	0	0	copy fasta	SAA1	chr11	18261264	18274967
SAA1_chr11_18261264_18274967	0/0	c0007	369	9	0	0	9	0	0	copy fasta	SAA1	chr11	18261264	18274967
SAA1_chr11_18261264_18274967	0/0	c0008	367	6	6	0	0	0	0	copy fasta	SAA1	chr11	18261264	18274967
SAA1_chr11_18261264_18274967	0/0	c0009	369	5	0	1	0	4	0	copy fasta	SAA1	chr11	18261264	18274967
SAA1_chr11_18261264_18274967	1/0	c0010	369	4	3	0	0	0	0	copy fasta	SAA1	chr11	18261264	18274967
SAA1_chr11_18261264_18274967	0/0	c0011	369	3	0	3	0	0	0	copy fasta	SAA1	chr11	18261264	18274967
SAA1_chr11_18261264_18274967	0/0	c0012	369	2	0	0	2	0	0	copy fasta	SAA1	chr11	18261264	18274967
SAA1_chr11_18261264_18274967	0/0	c0013	369	2	0	1	1	0	0	copy fasta	SAA1	chr11	18261264	18274967
SAA1_chr11_18261264_18274967	0/0	c0014	369	2	0	0	2	0	0	copy fasta	SAA1	chr11	18261264	18274967
SAA1_chr11_18261264_18274967	0/0	c0015	369	1	1	0	0	0	0	copy fasta	SAA1	chr11	18261264	18274967
SAA1_chr11_18261264_18274967	0/0	c0016	369	1	1	0	0	0	0	copy fasta	SAA1	chr11	18261264	18274967
SAA1_chr11_18261264_18274967	0/0	c0017	369	1	1	0	0	0	0	copy fasta	SAA1	chr11	18261264	18274967
SAA2_chr11_18240240_18253668	0/1	c0001	369	374	62	66	195	15	35	copy fasta	SAA2	chr11	18240240	18253668
SAA2_chr11_18240240_18253668	1/0	c0002	369	89	32	18	25	2	11	copy fasta	SAA2	chr11	18240240	18253668
SAA2_chr11_18240240_18253668	0/0	c0003	369	2	0	2	0	0	0	copy fasta	SAA2	chr11	18240240	18253668
SAA2_chr11_18240240_18253668	0/0	c0004	369	2	0	0	2	0	0	copy fasta	SAA2	chr11	18240240	18253668
SAA2_chr11_18240240_18253668	0/0	c0005	369	2	1	0	0	1	0	copy fasta	SAA2	chr11	18240240	18253668
SAA2_chr11_18240240_18253668	0/0	c0006	369	1	0	0	1	0	0	copy fasta	SAA2	chr11	18240240	18253668
SAA2_chr11_18240240_18253668	0/0	c0007	369	1	0	0	1	0	0	copy fasta	SAA2	chr11	18240240	18253668
SAA2_chr11_18240240_18253668	0/0	c0008	369	1	1	0	0	0	0	copy fasta	SAA2	chr11	18240240	18253668
SAA2_chr11_18240240_18253668	0/0	c0009	369	1	1	0	0	0	0	copy fasta	SAA2	chr11	18240240	18253668
SAA2_chr11_18240240_18253668	0/0	c0010	369	1	1	0	0	0	0	copy fasta	SAA2	chr11	18240240	18253668
SAA4_chr11_18226355_18241802	0/1	c0001	393	359	75	76	149	14	44	copy fasta	SAA4	chr11	18226355	18241802
SAA4_chr11_18226355_18241802	1/0	c0002	393	53	21	6	23	0	2	copy fasta	SAA4	chr11	18226355	18241802
SAA4_chr11_18226355_18241802	0/0	c0003	393	4	0	0	4	0	0	copy fasta	SAA4	chr11	18226355	18241802
SAA4_chr11_18226355_18241802	0/0	c0004	393	1	1	0	0	0	0	copy fasta	SAA4	chr11	18226355	18241802
SAA4_chr11_18226355_18241802	0/0	c0005	393	1	1	0	0	0	0	copy fasta	SAA4	chr11	18226355	18241802
SAAL1_chr11_18075292_18111082	1/0	c0001	1425	151	43	28	57	5	17	copy fasta	SAAL1	chr11	18075292	18111082
SAAL1_chr11_18075292_18111082	0/0	c0002	1428	46	1	9	24	3	9	copy fasta	SAAL1	chr11	18075292	18111082
SAAL1_chr11_18075292_18111082	0/0	c0003	1425	29	16	5	2	2	4	copy fasta	SAAL1	chr11	18075292	18111082
SAAL1_chr11_18075292_18111082	0/0	c0004	1425	13	13	0	0	0	0	copy fasta	SAAL1	chr11	18075292	18111082
SAAL1_chr11_18075292_18111082	0/0	c0005	1431	10	0	0	10	0	0	copy fasta	SAAL1	chr11	18075292	18111082
SAAL1_chr11_18075292_18111082	0/0	c0006	1425	10	9	1	0	0	0	copy fasta	SAAL1	chr11	18075292	18111082
SAAL1_chr11_18075292_18111082	0/0	c0007	1425	8	8	0	0	0	0	copy fasta	SAAL1	chr11	18075292	18111082
SAAL1_chr11_18075292_18111082	0/1	c0008	1428	2	0	0	1	0	0	copy fasta	SAAL1	chr11	18075292	18111082
SAAL1_chr11_18075292_18111082	0/0	c0009	1425	2	2	0	0	0	0	copy fasta	SAAL1	chr11	18075292	18111082
SAAL1_chr11_18075292_18111082	0/0	c0010	1425	2	2	0	0	0	0	copy fasta	SAAL1	chr11	18075292	18111082
SAAL1_chr11_18075292_18111082	0/0	c0011	1425	2	0	0	2	0	0	copy fasta	SAAL1	chr11	18075292	18111082
SAAL1_chr11_18075292_18111082	0/0	c0012	1425	2	0	1	0	0	1	copy fasta	SAAL1	chr11	18075292	18111082
SAAL1_chr11_18075292_18111082	0/0	c0013	1428	1	0	0	1	0	0	copy fasta	SAAL1	chr11	18075292	18111082
SAAL1_chr11_18075292_18111082	0/0	c0014	1425	1	0	0	0	1	0	copy fasta	SAAL1	chr11	18075292	18111082
SAAL1_chr11_18075292_18111082	0/0	c0015	1425	1	0	0	1	0	0	copy fasta	SAAL1	chr11	18075292	18111082
SAAL1_chr11_18075292_18111082	0/0	c0016	1425	1	1	0	0	0	0	copy fasta	SAAL1	chr11	18075292	18111082
SAAL1_chr11_18075292_18111082	0/0	c0017	1425	1	0	0	0	1	0	copy fasta	SAAL1	chr11	18075292	18111082
SAAL1_chr11_18075292_18111082	0/0	c0018	1425	1	0	0	0	0	1	copy fasta	SAAL1	chr11	18075292	18111082