Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ABCG5_chr2_43807472_43843839	0/0	c0015	1956	1	0	1	0	0	0	copy fasta	ABCG5	chr2	43807472	43843839
ABCG5_chr2_43807472_43843839	0/0	c0016	1956	1	0	0	0	0	1	copy fasta	ABCG5	chr2	43807472	43843839
ABCG5_chr2_43807472_43843839	0/0	c0017	1956	1	0	0	1	0	0	copy fasta	ABCG5	chr2	43807472	43843839
ABCG5_chr2_43807472_43843839	0/0	c0018	1956	1	1	0	0	0	0	copy fasta	ABCG5	chr2	43807472	43843839
ABCG8_chr2_43833971_43887988	0/0	c0001	2022	102	12	11	66	1	12	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	c0002	2022	51	18	16	9	3	5	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	c0003	2022	49	14	12	16	2	5	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	c0004	2022	27	9	8	5	2	3	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	c0005	2022	12	4	2	4	0	2	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	1/1	c0006	2022	12	2	6	0	1	1	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	c0007	2022	12	0	9	0	1	2	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	c0008	2022	9	2	3	0	0	4	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	c0009	2022	6	5	1	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	c0010	2022	4	1	1	0	0	2	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	c0011	2022	4	4	0	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	c0012	2022	4	4	0	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	c0013	2022	3	0	2	0	0	1	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	c0014	2022	3	1	2	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	c0015	2022	2	2	0	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	c0016	2022	2	2	0	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	c0017	2022	2	0	2	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	c0018	2022	1	1	0	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	c0019	2022	1	1	0	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	c0020	2022	1	1	0	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	c0021	2022	1	1	0	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	c0022	2022	1	1	0	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	c0023	2022	1	0	1	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	c0024	2022	1	0	0	0	0	1	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	c0025	2022	1	1	0	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	c0026	2022	1	0	0	1	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	c0027	2022	1	0	0	1	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	c0028	2022	1	1	0	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	c0029	2022	1	0	0	0	0	1	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	c0030	2022	1	0	0	0	0	1	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	c0031	2022	1	1	0	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABHD10_chr3_111974026_111998368	1/1	c0001	921	405	92	65	190	10	46	copy fasta	ABHD10	chr3	111974026	111998368
ABHD10_chr3_111974026_111998368	0/0	c0002	921	9	0	4	0	4	1	copy fasta	ABHD10	chr3	111974026	111998368
ABHD10_chr3_111974026_111998368	0/0	c0003	921	3	0	3	0	0	0	copy fasta	ABHD10	chr3	111974026	111998368
ABHD10_chr3_111974026_111998368	0/0	c0004	921	2	0	0	0	2	0	copy fasta	ABHD10	chr3	111974026	111998368
ABHD10_chr3_111974026_111998368	0/0	c0005	921	1	1	0	0	0	0	copy fasta	ABHD10	chr3	111974026	111998368
ABHD10_chr3_111974026_111998368	0/0	c0006	921	1	0	0	0	0	1	copy fasta	ABHD10	chr3	111974026	111998368
ABHD10_chr3_111974026_111998368	0/0	c0007	921	1	1	0	0	0	0	copy fasta	ABHD10	chr3	111974026	111998368
ABHD10_chr3_111974026_111998368	0/0	c0008	921	1	0	1	0	0	0	copy fasta	ABHD10	chr3	111974026	111998368
ABHD10_chr3_111974026_111998368	0/0	c0009	921	1	0	1	0	0	0	copy fasta	ABHD10	chr3	111974026	111998368
ABHD11_chr7_73731094_73743802	0/0	c0001	921	231	63	42	91	11	24	copy fasta	ABHD11	chr7	73731094	73743802
ABHD11_chr7_73731094_73743802	1/1	c0002	921	174	17	36	96	7	16	copy fasta	ABHD11	chr7	73731094	73743802
ABHD11_chr7_73731094_73743802	0/0	c0003	921	17	16	1	0	0	0	copy fasta	ABHD11	chr7	73731094	73743802
ABHD11_chr7_73731094_73743802	0/0	c0004	921	4	0	0	4	0	0	copy fasta	ABHD11	chr7	73731094	73743802
ABHD11_chr7_73731094_73743802	0/0	c0005	921	1	0	0	1	0	0	copy fasta	ABHD11	chr7	73731094	73743802
ABHD11_chr7_73731094_73743802	0/0	c0006	921	1	0	1	0	0	0	copy fasta	ABHD11	chr7	73731094	73743802