JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SAG_chr2_233302816_233352055	0/0	c0016	1218	1	1	0	0	0	0	copy fasta	SAG	chr2	233302816	233352055
SAG_chr2_233302816_233352055	0/0	c0017	1218	1	1	0	0	0	0	copy fasta	SAG	chr2	233302816	233352055
SAG_chr2_233302816_233352055	0/0	c0018	1218	1	1	0	0	0	0	copy fasta	SAG	chr2	233302816	233352055
SAG_chr2_233302816_233352055	0/0	c0019	1218	1	0	1	0	0	0	copy fasta	SAG	chr2	233302816	233352055
SAG_chr2_233302816_233352055	0/0	c0020	1218	1	1	0	0	0	0	copy fasta	SAG	chr2	233302816	233352055
SALL1_chr16_51130982_51156270	0/1	c0001	3975	151	4	43	82	6	15	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	c0002	3975	80	16	10	49	2	3	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	c0003	3975	31	11	9	4	2	5	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	c0004	3975	22	20	2	0	0	0	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	c0005	3978	12	10	0	2	0	0	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	c0006	3975	9	9	0	0	0	0	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	c0007	3975	6	0	3	2	1	0	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	c0008	3975	5	5	0	0	0	0	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	c0009	3981	4	4	0	0	0	0	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	c0010	3975	4	0	0	4	0	0	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	c0011	3981	3	3	0	0	0	0	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	c0012	3975	3	0	2	0	1	0	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	c0013	3978	3	0	0	3	0	0	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	c0014	3978	3	3	0	0	0	0	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	c0015	3975	2	0	0	0	0	2	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	c0016	3975	2	0	1	0	1	0	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	c0017	3978	2	1	1	0	0	0	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	c0018	3975	2	2	0	0	0	0	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	1/0	c0019	3975	2	1	0	0	0	0	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	c0020	3975	2	0	2	0	0	0	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	c0021	3975	2	0	0	2	0	0	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	c0022	3987	1	0	0	0	0	1	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	c0023	3978	1	1	0	0	0	0	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	c0024	3978	1	0	0	1	0	0	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	c0025	3978	1	0	1	0	0	0	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	c0026	3975	1	0	0	0	0	1	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	c0027	3975	1	0	0	1	0	0	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	c0028	3975	1	0	0	1	0	0	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	c0029	3975	1	0	0	1	0	0	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	c0030	3975	1	1	0	0	0	0	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	c0031	3975	1	0	0	1	0	0	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	c0032	3975	1	0	0	0	0	1	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	c0033	3975	1	0	0	0	1	0	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	c0034	3975	1	1	0	0	0	0	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	c0035	3975	1	1	0	0	0	0	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	c0036	3975	1	0	0	1	0	0	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	c0037	3975	1	0	0	0	0	1	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	c0038	3975	1	0	0	0	0	1	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	c0039	3975	1	1	0	0	0	0	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	c0040	3975	1	0	0	0	0	1	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	c0041	3975	1	1	0	0	0	0	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	c0042	3975	1	0	0	1	0	0	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	c0043	3975	1	0	0	1	0	0	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	c0044	3975	1	0	0	0	0	1	copy fasta	SALL1	chr16	51130982	51156270
SALL1_chr16_51130982_51156270	0/0	c0045	3975	1	1	0	0	0	0	copy fasta	SALL1	chr16	51130982	51156270