JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SALL2_chr14_21516080_21531346	0/0	c0001	3018	206	34	37	105	7	23	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	1/0	c0002	3018	82	2	10	53	3	13	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	c0003	3018	65	16	9	36	1	3	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	c0004	3018	21	4	3	10	1	3	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/1	c0005	3018	21	1	9	1	5	4	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	c0006	3018	8	8	0	0	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	c0007	3018	8	0	0	8	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	c0008	3018	6	6	0	0	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	c0009	3021	5	0	0	5	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	c0010	3018	5	5	0	0	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	c0011	3018	4	3	1	0	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	c0012	3018	3	0	2	0	0	1	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	c0013	3018	2	0	1	0	0	1	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	c0014	3018	2	2	0	0	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	c0015	3018	2	0	2	0	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	c0016	3018	2	0	0	2	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	c0017	3018	2	0	2	0	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	c0018	3018	2	2	0	0	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	c0019	3018	2	2	0	0	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	c0020	3018	1	1	0	0	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	c0021	3018	1	1	0	0	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	c0022	3018	1	1	0	0	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	c0023	3018	1	0	0	1	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	c0024	3018	1	0	0	1	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	c0025	3021	1	0	0	1	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	c0026	3018	1	1	0	0	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	c0027	3018	1	0	0	1	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	c0028	3018	1	1	0	0	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	c0029	3018	1	0	0	1	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	c0030	3018	1	0	0	1	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	c0031	3018	1	1	0	0	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	c0032	3018	1	1	0	0	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	c0033	3018	1	1	0	0	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	c0034	3018	1	1	0	0	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	c0035	3018	1	0	0	1	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	c0036	3018	1	0	0	1	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	c0037	3018	1	1	0	0	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	c0038	3018	1	1	0	0	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	c0039	3018	1	0	0	0	0	1	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	c0040	3018	1	0	0	0	0	1	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	c0041	3018	1	1	0	0	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	c0042	3018	1	0	0	0	1	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	c0043	3018	1	1	0	0	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL3_chr18_78974818_79003969	0/0	c0001	3903	172	31	35	74	10	22	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	c0002	3903	40	17	4	16	0	3	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	c0003	3903	20	19	1	0	0	0	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	c0004	3903	17	15	1	0	0	1	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/1	c0005	3903	10	3	1	1	0	4	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	c0006	3903	9	0	7	2	0	0	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	c0007	3903	8	0	1	5	2	0	copy fasta	SALL3	chr18	78974818	79003969