JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SALL3_chr18_78974818_79003969	0/0	c0008	3903	7	2	1	0	1	3	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	c0009	3903	4	0	0	4	0	0	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	c0010	3903	4	0	3	0	1	0	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	c0011	3903	2	2	0	0	0	0	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	c0012	3903	2	2	0	0	0	0	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	c0013	3903	1	0	0	0	1	0	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	c0014	3903	1	0	0	0	0	1	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	c0015	3903	1	0	0	0	1	0	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	c0016	3903	1	0	0	1	0	0	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	c0017	3903	1	0	0	1	0	0	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	c0018	3903	1	0	0	0	0	1	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	c0019	3903	1	0	1	0	0	0	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	c0020	3918	1	1	0	0	0	0	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	c0021	3903	1	1	0	0	0	0	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	c0022	3903	1	1	0	0	0	0	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	c0023	3903	1	0	0	1	0	0	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	c0024	3903	1	1	0	0	0	0	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	c0025	3903	1	0	0	1	0	0	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	c0026	3903	1	0	0	0	0	1	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	c0027	3903	1	0	0	1	0	0	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	c0028	3903	1	0	0	1	0	0	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	c0029	3903	1	0	0	1	0	0	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	c0030	3903	1	0	1	0	0	0	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	c0031	3903	1	0	0	1	0	0	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	c0032	3903	1	1	0	0	0	0	copy fasta	SALL3	chr18	78974818	79003969
SALL4_chr20_51777331_51807521	0/0	c0001	3162	160	49	29	69	4	9	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/1	c0002	3162	126	11	29	60	6	19	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	c0003	3162	19	1	3	11	2	2	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	c0004	3162	15	9	5	0	1	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	c0005	3162	13	0	5	0	2	6	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	c0006	3162	9	8	1	0	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	c0007	3162	6	0	0	6	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	c0008	3162	4	3	1	0	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	c0009	3162	3	3	0	0	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	c0010	3162	3	0	0	3	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	c0011	3162	3	3	0	0	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	c0012	3162	3	0	0	0	0	3	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	c0013	3162	2	1	1	0	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	c0014	3162	2	2	0	0	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	c0015	3162	2	0	2	0	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	c0016	3162	1	1	0	0	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	c0017	3162	1	0	0	1	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	c0018	3162	1	1	0	0	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	c0019	3162	1	1	0	0	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	c0020	3162	1	0	0	1	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	c0021	3162	1	0	0	1	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	c0022	3162	1	1	0	0	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	c0023	3162	1	0	0	0	0	1	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	c0024	3162	1	0	0	1	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	c0025	3162	1	1	0	0	0	0	copy fasta	SALL4	chr20	51777331	51807521