JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SALL4_chr20_51777331_51807521	1/0	c0026	3162	1	0	0	0	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	c0027	3162	1	1	0	0	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	c0028	3162	1	0	0	1	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	c0029	3162	1	0	0	0	1	0	copy fasta	SALL4	chr20	51777331	51807521
SAMD10_chr20_63969116_63984642	1/1	c0001	609	261	50	51	112	15	31	copy fasta	SAMD10	chr20	63969116	63984642
SAMD10_chr20_63969116_63984642	0/0	c0002	609	72	36	19	4	2	11	copy fasta	SAMD10	chr20	63969116	63984642
SAMD10_chr20_63969116_63984642	0/0	c0003	609	2	0	0	0	0	2	copy fasta	SAMD10	chr20	63969116	63984642
SAMD10_chr20_63969116_63984642	0/0	c0004	609	2	0	0	0	0	2	copy fasta	SAMD10	chr20	63969116	63984642
SAMD10_chr20_63969116_63984642	0/0	c0005	609	2	0	2	0	0	0	copy fasta	SAMD10	chr20	63969116	63984642
SAMD10_chr20_63969116_63984642	0/0	c0006	609	1	0	0	1	0	0	copy fasta	SAMD10	chr20	63969116	63984642
SAMD10_chr20_63969116_63984642	0/0	c0007	609	1	0	0	0	1	0	copy fasta	SAMD10	chr20	63969116	63984642
SAMD10_chr20_63969116_63984642	0/0	c0008	609	1	0	0	1	0	0	copy fasta	SAMD10	chr20	63969116	63984642
SAMD11_chr1_918923_949574	0/1	c0001	2535	183	10	39	82	14	37	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	c0002	2535	69	17	2	45	0	5	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	c0003	2535	34	2	8	24	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	c0004	2535	23	9	5	9	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	c0005	2535	14	3	5	0	3	3	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	c0006	2521	9	1	6	0	1	1	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	c0007	2631	8	8	0	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	c0008	2631	8	7	1	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	c0009	2535	7	0	0	6	0	1	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	c0010	2535	6	3	3	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	c0011	2535	6	6	0	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	c0012	2583	5	5	0	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	c0013	2679	4	3	1	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	c0014	2535	4	0	0	4	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	c0015	2535	3	0	0	3	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	c0016	2535	3	3	0	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	c0017	2535	3	0	3	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	c0018	2535	3	0	0	3	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	c0019	2535	2	2	0	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	c0020	2679	2	2	0	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	c0021	2535	2	0	0	2	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	c0022	2535	2	0	2	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	c0023	2535	2	2	0	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	c0024	2535	2	2	0	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	c0025	2535	2	0	2	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	c0026	2535	2	0	0	2	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	c0027	2535	2	0	0	2	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	c0028	2583	1	1	0	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	c0029	2535	1	0	0	1	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	c0030	2679	1	1	0	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	c0031	2521	1	1	0	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	c0032	2535	1	1	0	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	c0033	2535	1	0	0	1	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	1/0	c0034	2535	1	0	0	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	c0035	2583	1	1	0	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	c0036	2631	1	1	0	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	c0037	2728	1	1	0	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	c0038	2535	1	0	0	1	0	0	copy fasta	SAMD11	chr1	918923	949574