JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SAMD11_chr1_918923_949574	0/0	c0039	2535	1	0	1	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	c0040	2535	1	0	0	0	0	1	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	c0041	2535	1	0	1	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	c0042	2535	1	0	0	1	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	c0043	2583	1	0	1	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	c0044	2583	1	1	0	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	c0045	2521	1	0	1	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	c0046	2535	1	1	0	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	c0047	2535	1	0	0	1	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	c0048	2535	1	0	0	1	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	c0049	2535	1	1	0	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	c0050	2535	1	0	1	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD11_chr1_918923_949574	0/0	c0051	2535	1	1	0	0	0	0	copy fasta	SAMD11	chr1	918923	949574
SAMD12_chr8_118372984_118626963	0/0	c0001	606	99	55	16	17	0	11	copy fasta	SAMD12	chr8	118372984	118626963
SAMD12_chr8_118372984_118626963	1/1	c0002	606	75	10	9	33	0	21	copy fasta	SAMD12	chr8	118372984	118626963
SAMD12_chr8_118372984_118626963	0/0	c0003	606	13	6	5	0	0	2	copy fasta	SAMD12	chr8	118372984	118626963
SAMD12_chr8_118372984_118626963	0/0	c0004	606	1	1	0	0	0	0	copy fasta	SAMD12	chr8	118372984	118626963
SAMD13_chr1_84296708_84355798	1/1	c0001	309	297	73	64	122	11	25	copy fasta	SAMD13	chr1	84296708	84355798
SAMD13_chr1_84296708_84355798	0/0	c0002	309	18	8	0	0	3	7	copy fasta	SAMD13	chr1	84296708	84355798
SAMD13_chr1_84296708_84355798	0/0	c0003	309	1	1	0	0	0	0	copy fasta	SAMD13	chr1	84296708	84355798
SAMD14_chr17_50105040_50135160	1/1	c0001	1254	391	90	80	159	12	48	copy fasta	SAMD14	chr17	50105040	50135160
SAMD14_chr17_50105040_50135160	0/0	c0002	1254	3	0	0	3	0	0	copy fasta	SAMD14	chr17	50105040	50135160
SAMD14_chr17_50105040_50135160	0/0	c0003	1254	1	1	0	0	0	0	copy fasta	SAMD14	chr17	50105040	50135160
SAMD14_chr17_50105040_50135160	0/0	c0004	1254	1	1	0	0	0	0	copy fasta	SAMD14	chr17	50105040	50135160
SAMD14_chr17_50105040_50135160	0/0	c0005	1254	1	0	0	1	0	0	copy fasta	SAMD14	chr17	50105040	50135160
SAMD14_chr17_50105040_50135160	0/0	c0006	1254	1	0	0	1	0	0	copy fasta	SAMD14	chr17	50105040	50135160
SAMD15_chr14_77372379_77397163	1/1	c0001	2025	138	9	34	79	3	11	copy fasta	SAMD15	chr14	77372379	77397163
SAMD15_chr14_77372379_77397163	0/0	c0002	2025	83	33	14	14	6	16	copy fasta	SAMD15	chr14	77372379	77397163
SAMD15_chr14_77372379_77397163	0/0	c0003	2025	47	9	20	2	5	11	copy fasta	SAMD15	chr14	77372379	77397163
SAMD15_chr14_77372379_77397163	0/0	c0004	2025	19	18	1	0	0	0	copy fasta	SAMD15	chr14	77372379	77397163
SAMD15_chr14_77372379_77397163	0/0	c0005	2025	7	6	1	0	0	0	copy fasta	SAMD15	chr14	77372379	77397163
SAMD15_chr14_77372379_77397163	0/0	c0006	2025	4	4	0	0	0	0	copy fasta	SAMD15	chr14	77372379	77397163
SAMD15_chr14_77372379_77397163	0/0	c0007	2025	4	4	0	0	0	0	copy fasta	SAMD15	chr14	77372379	77397163
SAMD15_chr14_77372379_77397163	0/0	c0008	2025	3	3	0	0	0	0	copy fasta	SAMD15	chr14	77372379	77397163
SAMD15_chr14_77372379_77397163	0/0	c0009	2025	1	1	0	0	0	0	copy fasta	SAMD15	chr14	77372379	77397163
SAMD15_chr14_77372379_77397163	0/0	c0010	2025	1	1	0	0	0	0	copy fasta	SAMD15	chr14	77372379	77397163
SAMD15_chr14_77372379_77397163	0/0	c0011	2025	1	0	0	1	0	0	copy fasta	SAMD15	chr14	77372379	77397163
SAMD15_chr14_77372379_77397163	0/0	c0012	2025	1	0	0	0	0	1	copy fasta	SAMD15	chr14	77372379	77397163
SAMD15_chr14_77372379_77397163	0/0	c0013	2025	1	0	0	1	0	0	copy fasta	SAMD15	chr14	77372379	77397163
SAMD15_chr14_77372379_77397163	0/0	c0014	2025	1	0	0	1	0	0	copy fasta	SAMD15	chr14	77372379	77397163
SAMD15_chr14_77372379_77397163	0/0	c0015	2025	1	0	0	1	0	0	copy fasta	SAMD15	chr14	77372379	77397163
SAMD15_chr14_77372379_77397163	0/0	c0016	2025	1	0	0	1	0	0	copy fasta	SAMD15	chr14	77372379	77397163
SAMD15_chr14_77372379_77397163	0/0	c0017	2025	1	0	0	0	0	1	copy fasta	SAMD15	chr14	77372379	77397163
SAMD3_chr6_130139315_130227951	1/1	c0001	1563	321	72	57	138	10	42	copy fasta	SAMD3	chr6	130139315	130227951
SAMD3_chr6_130139315_130227951	0/0	c0002	1563	3	2	0	0	0	1	copy fasta	SAMD3	chr6	130139315	130227951
SAMD3_chr6_130139315_130227951	0/0	c0003	1563	3	0	0	3	0	0	copy fasta	SAMD3	chr6	130139315	130227951
SAMD3_chr6_130139315_130227951	0/0	c0004	1563	2	0	0	0	0	2	copy fasta	SAMD3	chr6	130139315	130227951
SAMD3_chr6_130139315_130227951	0/0	c0005	1563	1	1	0	0	0	0	copy fasta	SAMD3	chr6	130139315	130227951
SAMD3_chr6_130139315_130227951	0/0	c0006	1563	1	0	0	1	0	0	copy fasta	SAMD3	chr6	130139315	130227951
SAMD3_chr6_130139315_130227951	0/0	c0007	1563	1	1	0	0	0	0	copy fasta	SAMD3	chr6	130139315	130227951