JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SAMD3_chr6_130139315_130227951	0/0	c0008	1563	1	1	0	0	0	0	copy fasta	SAMD3	chr6	130139315	130227951
SAMD3_chr6_130139315_130227951	0/0	c0009	1563	1	1	0	0	0	0	copy fasta	SAMD3	chr6	130139315	130227951
SAMD3_chr6_130139315_130227951	0/0	c0010	1563	1	1	0	0	0	0	copy fasta	SAMD3	chr6	130139315	130227951
SAMD3_chr6_130139315_130227951	0/0	c0011	1563	1	0	1	0	0	0	copy fasta	SAMD3	chr6	130139315	130227951
SAMD3_chr6_130139315_130227951	0/0	c0012	1563	1	0	0	0	0	1	copy fasta	SAMD3	chr6	130139315	130227951
SAMD3_chr6_130139315_130227951	0/0	c0013	1563	1	1	0	0	0	0	copy fasta	SAMD3	chr6	130139315	130227951
SAMD4A_chr14_54562128_54798312	1/0	c0001	2157	229	73	41	90	5	19	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	c0002	2157	7	1	2	0	0	4	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/1	c0003	2160	5	0	2	2	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	c0004	2157	3	0	1	0	0	2	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	c0005	2157	2	2	0	0	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	c0006	2157	2	2	0	0	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	c0007	2157	2	2	0	0	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	c0008	2157	2	0	0	2	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	c0009	2160	1	0	0	1	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	c0010	2157	1	0	0	0	0	1	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	c0011	2157	1	0	0	1	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	c0012	2157	1	1	0	0	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	c0013	2157	1	1	0	0	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	c0014	2157	1	1	0	0	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	c0015	2157	1	1	0	0	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	c0016	2157	1	0	0	0	1	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	c0017	2157	1	1	0	0	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	c0018	2157	1	1	0	0	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4B_chr19_39337421_39390700	1/1	c0001	2085	222	73	38	81	10	18	copy fasta	SAMD4B	chr19	39337421	39390700
SAMD4B_chr19_39337421_39390700	0/0	c0002	2085	3	3	0	0	0	0	copy fasta	SAMD4B	chr19	39337421	39390700
SAMD4B_chr19_39337421_39390700	0/0	c0003	2085	2	0	0	0	0	2	copy fasta	SAMD4B	chr19	39337421	39390700
SAMD4B_chr19_39337421_39390700	0/0	c0004	2085	2	2	0	0	0	0	copy fasta	SAMD4B	chr19	39337421	39390700
SAMD4B_chr19_39337421_39390700	0/0	c0005	2085	2	0	0	0	2	0	copy fasta	SAMD4B	chr19	39337421	39390700
SAMD4B_chr19_39337421_39390700	0/0	c0006	2085	1	0	0	1	0	0	copy fasta	SAMD4B	chr19	39337421	39390700
SAMD5_chr6_147503690_147575021	1/1	c0001	522	215	39	46	98	9	21	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	c0002	522	113	33	23	31	6	20	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	c0003	522	20	0	3	15	1	1	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	c0004	522	8	8	0	0	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	c0005	522	4	4	0	0	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	c0006	522	3	1	2	0	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	c0007	522	1	1	0	0	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD7_chr3_169906572_169944175	1/1	c0001	1341	285	74	51	108	13	37	copy fasta	SAMD7	chr3	169906572	169944175
SAMD7_chr3_169906572_169944175	0/0	c0002	1341	55	9	8	33	0	5	copy fasta	SAMD7	chr3	169906572	169944175
SAMD7_chr3_169906572_169944175	0/0	c0003	1341	30	0	11	18	1	0	copy fasta	SAMD7	chr3	169906572	169944175
SAMD7_chr3_169906572_169944175	0/0	c0004	1341	23	8	1	13	0	1	copy fasta	SAMD7	chr3	169906572	169944175
SAMD7_chr3_169906572_169944175	0/0	c0005	1341	9	0	6	0	2	1	copy fasta	SAMD7	chr3	169906572	169944175
SAMD7_chr3_169906572_169944175	0/0	c0006	1341	2	2	0	0	0	0	copy fasta	SAMD7	chr3	169906572	169944175
SAMD7_chr3_169906572_169944175	0/0	c0007	1341	2	1	0	1	0	0	copy fasta	SAMD7	chr3	169906572	169944175
SAMD7_chr3_169906572_169944175	0/0	c0008	1341	2	2	0	0	0	0	copy fasta	SAMD7	chr3	169906572	169944175
SAMD7_chr3_169906572_169944175	0/0	c0009	1341	1	1	0	0	0	0	copy fasta	SAMD7	chr3	169906572	169944175
SAMD7_chr3_169906572_169944175	0/0	c0010	1341	1	0	1	0	0	0	copy fasta	SAMD7	chr3	169906572	169944175
SAMD7_chr3_169906572_169944175	0/0	c0011	1341	1	1	0	0	0	0	copy fasta	SAMD7	chr3	169906572	169944175
SAMD7_chr3_169906572_169944175	0/0	c0012	1341	1	0	0	1	0	0	copy fasta	SAMD7	chr3	169906572	169944175
SAMD7_chr3_169906572_169944175	0/0	c0013	1341	1	1	0	0	0	0	copy fasta	SAMD7	chr3	169906572	169944175