JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SAMD7_chr3_169906572_169944175	0/0	c0014	1341	1	0	0	1	0	0	copy fasta	SAMD7	chr3	169906572	169944175
SAMD7_chr3_169906572_169944175	0/0	c0015	1341	1	0	0	1	0	0	copy fasta	SAMD7	chr3	169906572	169944175
SAMD7_chr3_169906572_169944175	0/0	c0016	1341	1	1	0	0	0	0	copy fasta	SAMD7	chr3	169906572	169944175
SAMD8_chr10_75106656_75187123	1/1	c0001	1248	309	83	52	130	14	28	copy fasta	SAMD8	chr10	75106656	75187123
SAMD8_chr10_75106656_75187123	0/0	c0002	1248	4	4	0	0	0	0	copy fasta	SAMD8	chr10	75106656	75187123
SAMD8_chr10_75106656_75187123	0/0	c0003	1248	4	0	0	4	0	0	copy fasta	SAMD8	chr10	75106656	75187123
SAMD8_chr10_75106656_75187123	0/0	c0004	1248	2	0	2	0	0	0	copy fasta	SAMD8	chr10	75106656	75187123
SAMD8_chr10_75106656_75187123	0/0	c0005	1248	2	2	0	0	0	0	copy fasta	SAMD8	chr10	75106656	75187123
SAMD8_chr10_75106656_75187123	0/0	c0006	1248	1	0	0	1	0	0	copy fasta	SAMD8	chr10	75106656	75187123
SAMD8_chr10_75106656_75187123	0/0	c0007	1248	1	1	0	0	0	0	copy fasta	SAMD8	chr10	75106656	75187123
SAMD8_chr10_75106656_75187123	0/0	c0008	1248	1	0	0	1	0	0	copy fasta	SAMD8	chr10	75106656	75187123
SAMD9L_chr7_93125056_93153385	1/1	c0001	4755	137	12	25	67	8	23	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	c0002	4755	93	33	17	39	1	3	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	c0003	4755	51	9	6	35	0	1	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	c0004	4755	26	0	0	25	0	1	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	c0005	4755	26	3	8	9	0	6	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	c0006	4755	10	8	2	0	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	c0007	4755	8	7	1	0	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	c0008	4755	6	6	0	0	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	c0009	4755	5	5	0	0	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	c0010	4755	4	0	0	4	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	c0011	4755	4	3	1	0	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	c0012	4755	3	0	0	2	0	1	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	c0013	4755	3	0	0	0	0	3	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	c0014	4755	2	2	0	0	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	c0015	4755	2	2	0	0	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	c0016	4755	2	0	1	0	1	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	c0017	4755	2	0	1	0	0	1	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	c0018	4755	2	0	0	2	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	c0019	4755	2	0	2	0	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	c0020	4755	1	0	0	1	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	c0021	4755	1	1	0	0	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	c0022	4755	1	0	0	0	0	1	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	c0023	4755	1	0	0	1	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	c0024	4755	1	0	1	0	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	c0025	4755	1	0	0	1	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	c0026	4755	1	0	0	1	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	c0027	4755	1	0	0	1	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	c0028	4755	1	0	0	0	0	1	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	c0029	4755	1	0	0	0	0	1	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	c0030	4755	1	1	0	0	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	c0031	4755	1	0	1	0	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	c0032	4755	1	1	0	0	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	c0033	4755	1	1	0	0	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9_chr7_93094518_93122979	1/0	c0001	4770	122	10	21	66	5	19	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	c0002	4770	110	33	16	51	1	9	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	c0003	4770	51	6	7	37	0	1	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	c0004	4770	23	3	0	19	0	1	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	c0005	4770	18	13	5	0	0	0	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	c0006	4770	16	0	1	9	1	5	copy fasta	SAMD9	chr7	93094518	93122979