JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SAMD9_chr7_93094518_93122979	0/0	c0007	4770	11	11	0	0	0	0	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	c0008	4770	6	5	1	0	0	0	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	c0009	4770	3	3	0	0	0	0	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	c0010	4770	2	0	2	0	0	0	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	c0011	4770	2	0	2	0	0	0	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	c0012	4770	2	2	0	0	0	0	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	c0013	4770	2	2	0	0	0	0	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	c0014	4770	2	0	0	2	0	0	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	c0015	4770	2	0	2	0	0	0	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	c0016	4770	2	0	0	2	0	0	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	c0017	4770	1	1	0	0	0	0	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	c0018	4770	1	0	0	1	0	0	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	c0019	4770	1	1	0	0	0	0	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	c0020	4770	1	1	0	0	0	0	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	c0021	4770	1	0	0	1	0	0	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	c0022	4770	1	0	0	1	0	0	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	c0023	4770	1	0	0	0	0	1	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	c0024	4770	1	1	0	0	0	0	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/1	c0025	4770	1	0	0	0	0	0	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	c0026	4770	1	0	1	0	0	0	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	c0027	4770	1	1	0	0	0	0	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	c0028	4770	1	1	0	0	0	0	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	c0029	4770	1	0	0	1	0	0	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	c0030	4770	1	0	0	1	0	0	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	c0031	4770	1	0	1	0	0	0	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	c0032	4770	1	0	0	0	1	0	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	c0033	4770	1	0	1	0	0	0	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	c0034	4770	1	0	0	1	0	0	copy fasta	SAMD9	chr7	93094518	93122979
SAMHD1_chr20_36885229_36956708	1/1	c0001	1881	336	85	62	134	16	37	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	c0002	1881	1	1	0	0	0	0	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	c0003	1881	1	0	0	0	0	1	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	c0004	1881	1	1	0	0	0	0	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	c0005	1881	1	1	0	0	0	0	copy fasta	SAMHD1	chr20	36885229	36956708
SAMM50_chr22_43950442_44001529	0/1	c0001	1410	93	7	22	53	5	5	copy fasta	SAMM50	chr22	43950442	44001529
SAMM50_chr22_43950442_44001529	0/0	c0002	1410	77	36	6	22	1	12	copy fasta	SAMM50	chr22	43950442	44001529
SAMM50_chr22_43950442_44001529	1/0	c0003	1410	75	9	21	25	5	14	copy fasta	SAMM50	chr22	43950442	44001529
SAMM50_chr22_43950442_44001529	0/0	c0004	1410	73	3	10	50	3	7	copy fasta	SAMM50	chr22	43950442	44001529
SAMM50_chr22_43950442_44001529	0/0	c0005	1410	10	10	0	0	0	0	copy fasta	SAMM50	chr22	43950442	44001529
SAMM50_chr22_43950442_44001529	0/0	c0006	1410	10	7	2	0	0	1	copy fasta	SAMM50	chr22	43950442	44001529
SAMM50_chr22_43950442_44001529	0/0	c0007	1410	9	3	5	0	1	0	copy fasta	SAMM50	chr22	43950442	44001529
SAMM50_chr22_43950442_44001529	0/0	c0008	1410	9	8	1	0	0	0	copy fasta	SAMM50	chr22	43950442	44001529
SAMM50_chr22_43950442_44001529	0/0	c0009	1410	3	2	1	0	0	0	copy fasta	SAMM50	chr22	43950442	44001529
SAMM50_chr22_43950442_44001529	0/0	c0010	1410	3	3	0	0	0	0	copy fasta	SAMM50	chr22	43950442	44001529
SAMM50_chr22_43950442_44001529	0/0	c0011	1410	3	2	1	0	0	0	copy fasta	SAMM50	chr22	43950442	44001529
SAMM50_chr22_43950442_44001529	0/0	c0012	1410	3	1	1	0	1	0	copy fasta	SAMM50	chr22	43950442	44001529
SAMM50_chr22_43950442_44001529	0/0	c0013	1410	2	2	0	0	0	0	copy fasta	SAMM50	chr22	43950442	44001529
SAMM50_chr22_43950442_44001529	0/0	c0014	1410	2	0	0	2	0	0	copy fasta	SAMM50	chr22	43950442	44001529
SAMM50_chr22_43950442_44001529	0/0	c0015	1410	1	0	0	1	0	0	copy fasta	SAMM50	chr22	43950442	44001529
SAMM50_chr22_43950442_44001529	0/0	c0016	1410	1	0	0	1	0	0	copy fasta	SAMM50	chr22	43950442	44001529
SAMM50_chr22_43950442_44001529	0/0	c0017	1410	1	0	0	1	0	0	copy fasta	SAMM50	chr22	43950442	44001529