JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SAMM50_chr22_43950442_44001529	0/0	c0018	1410	1	0	0	1	0	0	copy fasta	SAMM50	chr22	43950442	44001529
SAMM50_chr22_43950442_44001529	0/0	c0019	1410	1	0	0	0	0	1	copy fasta	SAMM50	chr22	43950442	44001529
SAMM50_chr22_43950442_44001529	0/0	c0020	1410	1	1	0	0	0	0	copy fasta	SAMM50	chr22	43950442	44001529
SAMSN1_chr21_14480228_14551315	1/1	c0001	1122	285	57	52	133	15	26	copy fasta	SAMSN1	chr21	14480228	14551315
SAMSN1_chr21_14480228_14551315	0/0	c0002	1122	107	24	15	51	3	14	copy fasta	SAMSN1	chr21	14480228	14551315
SAMSN1_chr21_14480228_14551315	0/0	c0003	1122	12	10	2	0	0	0	copy fasta	SAMSN1	chr21	14480228	14551315
SAMSN1_chr21_14480228_14551315	0/0	c0004	1122	2	1	1	0	0	0	copy fasta	SAMSN1	chr21	14480228	14551315
SAMSN1_chr21_14480228_14551315	0/0	c0005	1122	1	1	0	0	0	0	copy fasta	SAMSN1	chr21	14480228	14551315
SAMSN1_chr21_14480228_14551315	0/0	c0006	1122	1	1	0	0	0	0	copy fasta	SAMSN1	chr21	14480228	14551315
SANBR_chr2_61060871_61129280	1/1	c0001	2157	179	35	42	70	7	23	copy fasta	SANBR	chr2	61060871	61129280
SANBR_chr2_61060871_61129280	0/0	c0002	2157	135	35	35	51	9	5	copy fasta	SANBR	chr2	61060871	61129280
SANBR_chr2_61060871_61129280	0/0	c0003	2157	21	21	0	0	0	0	copy fasta	SANBR	chr2	61060871	61129280
SANBR_chr2_61060871_61129280	0/0	c0004	2157	3	0	0	3	0	0	copy fasta	SANBR	chr2	61060871	61129280
SANBR_chr2_61060871_61129280	0/0	c0005	2157	1	0	0	1	0	0	copy fasta	SANBR	chr2	61060871	61129280
SANBR_chr2_61060871_61129280	0/0	c0006	2157	1	1	0	0	0	0	copy fasta	SANBR	chr2	61060871	61129280
SANBR_chr2_61060871_61129280	0/0	c0007	2157	1	0	1	0	0	0	copy fasta	SANBR	chr2	61060871	61129280
SANBR_chr2_61060871_61129280	0/0	c0008	2157	1	0	0	1	0	0	copy fasta	SANBR	chr2	61060871	61129280
SANBR_chr2_61060871_61129280	0/0	c0009	2157	1	0	0	1	0	0	copy fasta	SANBR	chr2	61060871	61129280
SANBR_chr2_61060871_61129280	0/0	c0010	2157	1	0	0	1	0	0	copy fasta	SANBR	chr2	61060871	61129280
SANBR_chr2_61060871_61129280	0/0	c0011	2157	1	0	0	1	0	0	copy fasta	SANBR	chr2	61060871	61129280
SANBR_chr2_61060871_61129280	0/0	c0012	2157	1	0	0	1	0	0	copy fasta	SANBR	chr2	61060871	61129280
SAP130_chr2_127936222_128033059	1/1	c0001	3174	248	73	43	101	6	23	copy fasta	SAP130	chr2	127936222	128033059
SAP130_chr2_127936222_128033059	0/0	c0002	3174	44	0	9	21	1	13	copy fasta	SAP130	chr2	127936222	128033059
SAP130_chr2_127936222_128033059	0/0	c0003	3174	31	5	1	24	0	1	copy fasta	SAP130	chr2	127936222	128033059
SAP130_chr2_127936222_128033059	0/0	c0004	3174	10	9	1	0	0	0	copy fasta	SAP130	chr2	127936222	128033059
SAP130_chr2_127936222_128033059	0/0	c0005	3174	5	0	5	0	0	0	copy fasta	SAP130	chr2	127936222	128033059
SAP130_chr2_127936222_128033059	0/0	c0006	3174	2	2	0	0	0	0	copy fasta	SAP130	chr2	127936222	128033059
SAP130_chr2_127936222_128033059	0/0	c0007	3174	2	1	1	0	0	0	copy fasta	SAP130	chr2	127936222	128033059
SAP130_chr2_127936222_128033059	0/0	c0008	3174	1	1	0	0	0	0	copy fasta	SAP130	chr2	127936222	128033059
SAP130_chr2_127936222_128033059	0/0	c0009	3174	1	0	0	1	0	0	copy fasta	SAP130	chr2	127936222	128033059
SAP130_chr2_127936222_128033059	0/0	c0010	3174	1	0	0	0	1	0	copy fasta	SAP130	chr2	127936222	128033059
SAP130_chr2_127936222_128033059	0/0	c0011	3174	1	0	0	1	0	0	copy fasta	SAP130	chr2	127936222	128033059
SAP130_chr2_127936222_128033059	0/0	c0012	3174	1	0	0	0	0	1	copy fasta	SAP130	chr2	127936222	128033059
SAP130_chr2_127936222_128033059	0/0	c0013	3174	1	0	0	1	0	0	copy fasta	SAP130	chr2	127936222	128033059
SAP130_chr2_127936222_128033059	0/0	c0014	3174	1	0	0	1	0	0	copy fasta	SAP130	chr2	127936222	128033059
SAP130_chr2_127936222_128033059	0/0	c0015	3174	1	1	0	0	0	0	copy fasta	SAP130	chr2	127936222	128033059
SAP18_chr13_21135119_21154097	0/0	c0001	519	218	11	48	128	9	22	copy fasta	SAP18	chr13	21135119	21154097
SAP18_chr13_21135119_21154097	1/1	c0002	519	205	75	32	61	9	26	copy fasta	SAP18	chr13	21135119	21154097
SAP18_chr13_21135119_21154097	0/0	c0003	519	2	2	0	0	0	0	copy fasta	SAP18	chr13	21135119	21154097
SAP18_chr13_21135119_21154097	0/0	c0004	519	1	0	0	1	0	0	copy fasta	SAP18	chr13	21135119	21154097
SAP25_chr7_100567228_100578900	1/1	c0001	894	368	82	60	158	18	48	copy fasta	SAP25	chr7	100567228	100578900
SAP25_chr7_100567228_100578900	0/0	c0002	894	5	4	1	0	0	0	copy fasta	SAP25	chr7	100567228	100578900
SAP25_chr7_100567228_100578900	0/0	c0003	894	2	2	0	0	0	0	copy fasta	SAP25	chr7	100567228	100578900
SAP25_chr7_100567228_100578900	0/0	c0004	894	2	0	0	0	0	2	copy fasta	SAP25	chr7	100567228	100578900
SAP25_chr7_100567228_100578900	0/0	c0005	894	1	0	0	1	0	0	copy fasta	SAP25	chr7	100567228	100578900
SAP25_chr7_100567228_100578900	0/0	c0006	894	1	0	0	1	0	0	copy fasta	SAP25	chr7	100567228	100578900
SAP25_chr7_100567228_100578900	0/0	c0007	894	1	0	1	0	0	0	copy fasta	SAP25	chr7	100567228	100578900
SAP25_chr7_100567228_100578900	0/0	c0008	894	1	1	0	0	0	0	copy fasta	SAP25	chr7	100567228	100578900
SAP25_chr7_100567228_100578900	0/0	c0009	894	1	0	0	1	0	0	copy fasta	SAP25	chr7	100567228	100578900
SAP25_chr7_100567228_100578900	0/0	c0010	894	1	1	0	0	0	0	copy fasta	SAP25	chr7	100567228	100578900