JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SAP25_chr7_100567228_100578900	0/0	c0011	894	1	1	0	0	0	0	copy fasta	SAP25	chr7	100567228	100578900
SAP25_chr7_100567228_100578900	0/0	c0012	894	1	0	0	1	0	0	copy fasta	SAP25	chr7	100567228	100578900
SAP25_chr7_100567228_100578900	0/0	c0013	894	1	1	0	0	0	0	copy fasta	SAP25	chr7	100567228	100578900
SAP30BP_chr17_75662338_75713059	1/1	c0001	927	362	88	58	160	12	42	copy fasta	SAP30BP	chr17	75662338	75713059
SAP30BP_chr17_75662338_75713059	0/0	c0002	927	6	0	2	0	0	4	copy fasta	SAP30BP	chr17	75662338	75713059
SAP30BP_chr17_75662338_75713059	0/0	c0003	927	1	1	0	0	0	0	copy fasta	SAP30BP	chr17	75662338	75713059
SAP30BP_chr17_75662338_75713059	0/0	c0004	927	1	1	0	0	0	0	copy fasta	SAP30BP	chr17	75662338	75713059
SAP30L_chr5_154440997_154466053	1/1	c0001	552	457	94	79	214	18	50	copy fasta	SAP30L	chr5	154440997	154466053
SAP30L_chr5_154440997_154466053	0/0	c0002	552	2	2	0	0	0	0	copy fasta	SAP30L	chr5	154440997	154466053
SAP30L_chr5_154440997_154466053	0/0	c0003	552	1	0	1	0	0	0	copy fasta	SAP30L	chr5	154440997	154466053
SAP30_chr4_173365954_173382532	1/1	c0001	663	337	91	52	144	8	40	copy fasta	SAP30	chr4	173365954	173382532
SAP30_chr4_173365954_173382532	0/0	c0002	663	22	2	2	18	0	0	copy fasta	SAP30	chr4	173365954	173382532
SAP30_chr4_173365954_173382532	0/0	c0003	663	2	0	0	0	2	0	copy fasta	SAP30	chr4	173365954	173382532
SAP30_chr4_173365954_173382532	0/0	c0004	663	1	1	0	0	0	0	copy fasta	SAP30	chr4	173365954	173382532
SAPCD1_chr6_31757656_31769850	0/1	c0001	537	336	79	54	142	18	42	copy fasta	SAPCD1	chr6	31757656	31769850
SAPCD1_chr6_31757656_31769850	0/0	c0002	537	72	9	19	40	0	4	copy fasta	SAPCD1	chr6	31757656	31769850
SAPCD1_chr6_31757656_31769850	0/0	c0003	537	4	0	4	0	0	0	copy fasta	SAPCD1	chr6	31757656	31769850
SAPCD1_chr6_31757656_31769850	0/0	c0004	537	3	3	0	0	0	0	copy fasta	SAPCD1	chr6	31757656	31769850
SAPCD1_chr6_31757656_31769850	0/0	c0005	537	1	1	0	0	0	0	copy fasta	SAPCD1	chr6	31757656	31769850
SAPCD1_chr6_31757656_31769850	0/0	c0006	537	1	0	1	0	0	0	copy fasta	SAPCD1	chr6	31757656	31769850
SAPCD2_chr9_137057127_137075557	1/1	c0001	1185	216	45	51	75	12	31	copy fasta	SAPCD2	chr9	137057127	137075557
SAPCD2_chr9_137057127_137075557	0/0	c0002	1185	183	44	21	96	6	16	copy fasta	SAPCD2	chr9	137057127	137075557
SAPCD2_chr9_137057127_137075557	0/0	c0003	1185	5	5	0	0	0	0	copy fasta	SAPCD2	chr9	137057127	137075557
SAPCD2_chr9_137057127_137075557	0/0	c0004	1185	2	1	1	0	0	0	copy fasta	SAPCD2	chr9	137057127	137075557
SAPCD2_chr9_137057127_137075557	0/0	c0005	1185	2	0	0	2	0	0	copy fasta	SAPCD2	chr9	137057127	137075557
SAPCD2_chr9_137057127_137075557	0/0	c0006	1185	1	0	1	0	0	0	copy fasta	SAPCD2	chr9	137057127	137075557
SAPCD2_chr9_137057127_137075557	0/0	c0007	1185	1	0	0	1	0	0	copy fasta	SAPCD2	chr9	137057127	137075557
SAPCD2_chr9_137057127_137075557	0/0	c0008	1185	1	0	1	0	0	0	copy fasta	SAPCD2	chr9	137057127	137075557
SAPCD2_chr9_137057127_137075557	0/0	c0009	1185	1	0	0	0	0	1	copy fasta	SAPCD2	chr9	137057127	137075557
SAPCD2_chr9_137057127_137075557	0/0	c0010	1185	1	0	1	0	0	0	copy fasta	SAPCD2	chr9	137057127	137075557
SAPCD2_chr9_137057127_137075557	0/0	c0011	1185	1	1	0	0	0	0	copy fasta	SAPCD2	chr9	137057127	137075557
SAR1A_chr10_70142289_70175514	1/1	c0001	597	420	96	76	184	18	44	copy fasta	SAR1A	chr10	70142289	70175514
SAR1B_chr5_134596149_134637828	1/1	c0001	597	257	91	51	88	7	18	copy fasta	SAR1B	chr5	134596149	134637828
SAR1B_chr5_134596149_134637828	0/0	c0002	597	62	1	7	43	1	10	copy fasta	SAR1B	chr5	134596149	134637828
SAR1B_chr5_134596149_134637828	0/0	c0003	597	1	0	0	1	0	0	copy fasta	SAR1B	chr5	134596149	134637828
SAR1B_chr5_134596149_134637828	0/0	c0004	597	1	0	0	1	0	0	copy fasta	SAR1B	chr5	134596149	134637828
SAR1B_chr5_134596149_134637828	0/0	c0005	597	1	0	0	1	0	0	copy fasta	SAR1B	chr5	134596149	134637828
SARAF_chr8_30058003_30088064	0/1	c0001	1020	334	69	55	158	14	37	copy fasta	SARAF	chr8	30058003	30088064
SARAF_chr8_30058003_30088064	1/0	c0002	1020	11	10	0	0	0	0	copy fasta	SARAF	chr8	30058003	30088064
SARAF_chr8_30058003_30088064	0/0	c0003	1020	7	6	1	0	0	0	copy fasta	SARAF	chr8	30058003	30088064
SARAF_chr8_30058003_30088064	0/0	c0004	1020	3	3	0	0	0	0	copy fasta	SARAF	chr8	30058003	30088064
SARAF_chr8_30058003_30088064	0/0	c0005	1020	2	2	0	0	0	0	copy fasta	SARAF	chr8	30058003	30088064
SARAF_chr8_30058003_30088064	0/0	c0006	1020	1	1	0	0	0	0	copy fasta	SARAF	chr8	30058003	30088064
SARAF_chr8_30058003_30088064	0/0	c0007	1020	1	1	0	0	0	0	copy fasta	SARAF	chr8	30058003	30088064
SARAF_chr8_30058003_30088064	0/0	c0008	1020	1	0	0	0	0	1	copy fasta	SARAF	chr8	30058003	30088064
SARDH_chr9_133658560_133743352	0/1	c0001	2757	52	5	12	27	2	5	copy fasta	SARDH	chr9	133658560	133743352
SARDH_chr9_133658560_133743352	0/0	c0002	2757	16	5	1	7	0	3	copy fasta	SARDH	chr9	133658560	133743352
SARDH_chr9_133658560_133743352	0/0	c0003	2757	16	11	3	0	0	2	copy fasta	SARDH	chr9	133658560	133743352
SARDH_chr9_133658560_133743352	0/0	c0004	2757	16	1	3	5	1	6	copy fasta	SARDH	chr9	133658560	133743352
SARDH_chr9_133658560_133743352	0/0	c0005	2757	11	0	3	7	0	1	copy fasta	SARDH	chr9	133658560	133743352