JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ATG3_chr3_112527510_112566962	0/0	c0002	945	80	34	8	36	0	2	copy fasta	ATG3	chr3	112527510	112566962
ATG3_chr3_112527510_112566962	0/0	c0003	945	1	0	1	0	0	0	copy fasta	ATG3	chr3	112527510	112566962
ATG3_chr3_112527510_112566962	0/0	c0004	945	1	0	1	0	0	0	copy fasta	ATG3	chr3	112527510	112566962
ATG4A_chrX_108086778_108159671	1/1	c0001	1197	236	59	46	88	13	28	copy fasta	ATG4A	chrX	108086778	108159671
ATG4A_chrX_108086778_108159671	0/0	c0002	1197	7	6	1	0	0	0	copy fasta	ATG4A	chrX	108086778	108159671
ATG4A_chrX_108086778_108159671	0/0	c0003	1197	4	4	0	0	0	0	copy fasta	ATG4A	chrX	108086778	108159671
ATG4A_chrX_108086778_108159671	0/0	c0004	1197	1	0	0	1	0	0	copy fasta	ATG4A	chrX	108086778	108159671
ATG4A_chrX_108086778_108159671	0/0	c0005	1197	1	1	0	0	0	0	copy fasta	ATG4A	chrX	108086778	108159671
ATG4B_chr2_241632693_241678857	0/1	c0001	1182	223	58	45	86	6	27	copy fasta	ATG4B	chr2	241632693	241678857
ATG4B_chr2_241632693_241678857	0/0	c0002	1182	87	10	10	56	5	6	copy fasta	ATG4B	chr2	241632693	241678857
ATG4B_chr2_241632693_241678857	1/0	c0003	1182	58	4	7	37	3	6	copy fasta	ATG4B	chr2	241632693	241678857
ATG4B_chr2_241632693_241678857	0/0	c0004	1182	23	11	1	7	2	2	copy fasta	ATG4B	chr2	241632693	241678857
ATG4B_chr2_241632693_241678857	0/0	c0005	1182	5	0	0	5	0	0	copy fasta	ATG4B	chr2	241632693	241678857
ATG4B_chr2_241632693_241678857	0/0	c0006	1182	4	2	2	0	0	0	copy fasta	ATG4B	chr2	241632693	241678857
ATG4B_chr2_241632693_241678857	0/0	c0007	1182	4	0	0	4	0	0	copy fasta	ATG4B	chr2	241632693	241678857
ATG4B_chr2_241632693_241678857	0/0	c0008	1182	2	2	0	0	0	0	copy fasta	ATG4B	chr2	241632693	241678857
ATG4B_chr2_241632693_241678857	0/0	c0009	1182	1	0	1	0	0	0	copy fasta	ATG4B	chr2	241632693	241678857
ATG4B_chr2_241632693_241678857	0/0	c0010	1182	1	0	0	0	0	1	copy fasta	ATG4B	chr2	241632693	241678857
ATG4B_chr2_241632693_241678857	0/0	c0011	1182	1	1	0	0	0	0	copy fasta	ATG4B	chr2	241632693	241678857
ATG4B_chr2_241632693_241678857	0/0	c0012	1182	1	0	0	1	0	0	copy fasta	ATG4B	chr2	241632693	241678857
ATG4C_chr1_62779132_62870516	1/1	c0001	1377	304	80	59	128	10	25	copy fasta	ATG4C	chr1	62779132	62870516
ATG4C_chr1_62779132_62870516	0/0	c0002	1377	11	0	10	0	0	1	copy fasta	ATG4C	chr1	62779132	62870516
ATG4C_chr1_62779132_62870516	0/0	c0003	1377	3	3	0	0	0	0	copy fasta	ATG4C	chr1	62779132	62870516
ATG4C_chr1_62779132_62870516	0/0	c0004	1377	1	0	0	0	0	1	copy fasta	ATG4C	chr1	62779132	62870516
ATG4C_chr1_62779132_62870516	0/0	c0005	1377	1	0	1	0	0	0	copy fasta	ATG4C	chr1	62779132	62870516
ATG4C_chr1_62779132_62870516	0/0	c0006	1377	1	1	0	0	0	0	copy fasta	ATG4C	chr1	62779132	62870516
ATG4C_chr1_62779132_62870516	0/0	c0007	1377	1	0	0	0	0	1	copy fasta	ATG4C	chr1	62779132	62870516
ATG4D_chr19_10538904_10558418	1/1	c0001	1425	357	76	69	158	12	40	copy fasta	ATG4D	chr19	10538904	10558418
ATG4D_chr19_10538904_10558418	0/0	c0002	1425	33	7	7	8	4	7	copy fasta	ATG4D	chr19	10538904	10558418
ATG4D_chr19_10538904_10558418	0/0	c0003	1425	8	0	0	8	0	0	copy fasta	ATG4D	chr19	10538904	10558418
ATG4D_chr19_10538904_10558418	0/0	c0004	1425	1	0	0	1	0	0	copy fasta	ATG4D	chr19	10538904	10558418
ATG4D_chr19_10538904_10558418	0/0	c0005	1425	1	0	1	0	0	0	copy fasta	ATG4D	chr19	10538904	10558418
ATG4D_chr19_10538904_10558418	0/0	c0006	1425	1	0	1	0	0	0	copy fasta	ATG4D	chr19	10538904	10558418
ATG4D_chr19_10538904_10558418	0/0	c0007	1425	1	1	0	0	0	0	copy fasta	ATG4D	chr19	10538904	10558418
ATG4D_chr19_10538904_10558418	0/0	c0008	1425	1	0	0	1	0	0	copy fasta	ATG4D	chr19	10538904	10558418
ATG4D_chr19_10538904_10558418	0/0	c0009	1425	1	0	0	0	0	1	copy fasta	ATG4D	chr19	10538904	10558418
ATG4D_chr19_10538904_10558418	0/0	c0010	1425	1	0	0	1	0	0	copy fasta	ATG4D	chr19	10538904	10558418
ATG4D_chr19_10538904_10558418	0/0	c0011	1425	1	0	0	1	0	0	copy fasta	ATG4D	chr19	10538904	10558418
ATG5_chr6_106179476_106330760	1/1	c0001	828	344	66	56	172	12	36	copy fasta	ATG5	chr6	106179476	106330760
ATG5_chr6_106179476_106330760	0/0	c0002	828	6	0	0	6	0	0	copy fasta	ATG5	chr6	106179476	106330760
ATG5_chr6_106179476_106330760	0/0	c0003	828	4	4	0	0	0	0	copy fasta	ATG5	chr6	106179476	106330760
ATG5_chr6_106179476_106330760	0/0	c0004	828	2	0	0	0	2	0	copy fasta	ATG5	chr6	106179476	106330760
ATG5_chr6_106179476_106330760	0/0	c0005	828	2	2	0	0	0	0	copy fasta	ATG5	chr6	106179476	106330760
ATG7_chr3_11267397_11562665	1/1	c0001	2112	209	55	42	86	5	19	copy fasta	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	c0002	2112	63	31	8	11	3	10	copy fasta	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	c0003	2112	11	6	5	0	0	0	copy fasta	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	c0004	2112	2	1	0	0	0	1	copy fasta	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	c0005	2112	2	0	2	0	0	0	copy fasta	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	c0006	2112	1	0	0	1	0	0	copy fasta	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	c0007	2112	1	0	1	0	0	0	copy fasta	ATG7	chr3	11267397	11562665