JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SARDH_chr9_133658560_133743352	0/0	c0056	2757	1	1	0	0	0	0	copy fasta	SARDH	chr9	133658560	133743352
SARDH_chr9_133658560_133743352	0/0	c0057	2757	1	1	0	0	0	0	copy fasta	SARDH	chr9	133658560	133743352
SARDH_chr9_133658560_133743352	0/0	c0058	2757	1	0	0	0	0	1	copy fasta	SARDH	chr9	133658560	133743352
SARDH_chr9_133658560_133743352	0/0	c0059	2757	1	0	1	0	0	0	copy fasta	SARDH	chr9	133658560	133743352
SARDH_chr9_133658560_133743352	0/0	c0060	2757	1	0	1	0	0	0	copy fasta	SARDH	chr9	133658560	133743352
SARDH_chr9_133658560_133743352	0/0	c0061	2757	1	1	0	0	0	0	copy fasta	SARDH	chr9	133658560	133743352
SARDH_chr9_133658560_133743352	0/0	c0062	2757	1	0	1	0	0	0	copy fasta	SARDH	chr9	133658560	133743352
SARDH_chr9_133658560_133743352	0/0	c0063	2757	1	0	0	1	0	0	copy fasta	SARDH	chr9	133658560	133743352
SARDH_chr9_133658560_133743352	0/0	c0064	2757	1	1	0	0	0	0	copy fasta	SARDH	chr9	133658560	133743352
SARDH_chr9_133658560_133743352	0/0	c0065	2757	1	0	0	0	1	0	copy fasta	SARDH	chr9	133658560	133743352
SARDH_chr9_133658560_133743352	0/0	c0066	2757	1	0	0	0	0	1	copy fasta	SARDH	chr9	133658560	133743352
SARDH_chr9_133658560_133743352	0/0	c0067	2757	1	0	1	0	0	0	copy fasta	SARDH	chr9	133658560	133743352
SARDH_chr9_133658560_133743352	0/0	c0068	2757	1	0	1	0	0	0	copy fasta	SARDH	chr9	133658560	133743352
SARM1_chr17_28366694_28409049	1/1	c0001	2175	325	92	61	120	10	40	copy fasta	SARM1	chr17	28366694	28409049
SARM1_chr17_28366694_28409049	0/0	c0002	2175	5	0	0	5	0	0	copy fasta	SARM1	chr17	28366694	28409049
SARM1_chr17_28366694_28409049	0/0	c0003	2175	2	0	2	0	0	0	copy fasta	SARM1	chr17	28366694	28409049
SARM1_chr17_28366694_28409049	0/0	c0004	2175	1	1	0	0	0	0	copy fasta	SARM1	chr17	28366694	28409049
SARM1_chr17_28366694_28409049	0/0	c0005	2175	1	0	0	1	0	0	copy fasta	SARM1	chr17	28366694	28409049
SARM1_chr17_28366694_28409049	0/0	c0006	2175	1	1	0	0	0	0	copy fasta	SARM1	chr17	28366694	28409049
SARM1_chr17_28366694_28409049	0/0	c0007	2175	1	0	1	0	0	0	copy fasta	SARM1	chr17	28366694	28409049
SARNP_chr12_55752270_55822724	1/1	c0001	633	274	92	52	94	6	28	copy fasta	SARNP	chr12	55752270	55822724
SARNP_chr12_55752270_55822724	0/0	c0002	633	2	0	0	2	0	0	copy fasta	SARNP	chr12	55752270	55822724
SARS1_chr1_109208918_109243182	1/1	c0001	1545	391	88	72	167	18	44	copy fasta	SARS1	chr1	109208918	109243182
SARS1_chr1_109208918_109243182	0/0	c0002	1545	4	4	0	0	0	0	copy fasta	SARS1	chr1	109208918	109243182
SARS1_chr1_109208918_109243182	0/0	c0003	1545	4	4	0	0	0	0	copy fasta	SARS1	chr1	109208918	109243182
SARS1_chr1_109208918_109243182	0/0	c0004	1545	2	0	0	0	0	2	copy fasta	SARS1	chr1	109208918	109243182
SARS1_chr1_109208918_109243182	0/0	c0005	1545	1	0	0	1	0	0	copy fasta	SARS1	chr1	109208918	109243182
SARS2_chr19_38910266_38935763	1/1	c0001	1557	280	58	63	112	12	33	copy fasta	SARS2	chr19	38910266	38935763
SARS2_chr19_38910266_38935763	0/0	c0002	1557	102	9	12	66	4	11	copy fasta	SARS2	chr19	38910266	38935763
SARS2_chr19_38910266_38935763	0/0	c0003	1557	27	26	0	1	0	0	copy fasta	SARS2	chr19	38910266	38935763
SARS2_chr19_38910266_38935763	0/0	c0004	1557	2	2	0	0	0	0	copy fasta	SARS2	chr19	38910266	38935763
SARS2_chr19_38910266_38935763	0/0	c0005	1557	2	0	0	0	0	2	copy fasta	SARS2	chr19	38910266	38935763
SARS2_chr19_38910266_38935763	0/0	c0006	1557	2	0	0	0	0	2	copy fasta	SARS2	chr19	38910266	38935763
SARS2_chr19_38910266_38935763	0/0	c0007	1557	1	0	1	0	0	0	copy fasta	SARS2	chr19	38910266	38935763
SARS2_chr19_38910266_38935763	0/0	c0008	1557	1	1	0	0	0	0	copy fasta	SARS2	chr19	38910266	38935763
SARS2_chr19_38910266_38935763	0/0	c0009	1557	1	0	0	1	0	0	copy fasta	SARS2	chr19	38910266	38935763
SARS2_chr19_38910266_38935763	0/0	c0010	1557	1	1	0	0	0	0	copy fasta	SARS2	chr19	38910266	38935763
SARS2_chr19_38910266_38935763	0/0	c0011	1557	1	1	0	0	0	0	copy fasta	SARS2	chr19	38910266	38935763
SART1_chr11_65956734_65985137	0/0	c0001	2403	149	5	37	86	5	16	copy fasta	SART1	chr11	65956734	65985137
SART1_chr11_65956734_65985137	0/1	c0002	2403	111	24	23	31	7	25	copy fasta	SART1	chr11	65956734	65985137
SART1_chr11_65956734_65985137	1/0	c0003	2403	46	26	3	16	0	0	copy fasta	SART1	chr11	65956734	65985137
SART1_chr11_65956734_65985137	0/0	c0004	2403	29	6	1	22	0	0	copy fasta	SART1	chr11	65956734	65985137
SART1_chr11_65956734_65985137	0/0	c0005	2403	24	22	2	0	0	0	copy fasta	SART1	chr11	65956734	65985137
SART1_chr11_65956734_65985137	0/0	c0006	2403	3	2	1	0	0	0	copy fasta	SART1	chr11	65956734	65985137
SART1_chr11_65956734_65985137	0/0	c0007	2403	3	3	0	0	0	0	copy fasta	SART1	chr11	65956734	65985137
SART1_chr11_65956734_65985137	0/0	c0008	2403	3	0	0	3	0	0	copy fasta	SART1	chr11	65956734	65985137
SART1_chr11_65956734_65985137	0/0	c0009	2403	2	0	0	2	0	0	copy fasta	SART1	chr11	65956734	65985137
SART1_chr11_65956734_65985137	0/0	c0010	2403	2	0	0	2	0	0	copy fasta	SART1	chr11	65956734	65985137
SART1_chr11_65956734_65985137	0/0	c0011	2403	1	0	0	1	0	0	copy fasta	SART1	chr11	65956734	65985137
SART1_chr11_65956734_65985137	0/0	c0012	2403	1	0	1	0	0	0	copy fasta	SART1	chr11	65956734	65985137