JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SART1_chr11_65956734_65985137	0/0	c0013	2403	1	0	0	1	0	0	copy fasta	SART1	chr11	65956734	65985137
SART1_chr11_65956734_65985137	0/0	c0014	2403	1	1	0	0	0	0	copy fasta	SART1	chr11	65956734	65985137
SART1_chr11_65956734_65985137	0/0	c0015	2403	1	0	0	1	0	0	copy fasta	SART1	chr11	65956734	65985137
SART1_chr11_65956734_65985137	0/0	c0016	2403	1	1	0	0	0	0	copy fasta	SART1	chr11	65956734	65985137
SART1_chr11_65956734_65985137	0/0	c0017	2403	1	1	0	0	0	0	copy fasta	SART1	chr11	65956734	65985137
SART1_chr11_65956734_65985137	0/0	c0018	2403	1	1	0	0	0	0	copy fasta	SART1	chr11	65956734	65985137
SART1_chr11_65956734_65985137	0/0	c0019	2403	1	0	0	1	0	0	copy fasta	SART1	chr11	65956734	65985137
SART1_chr11_65956734_65985137	0/0	c0020	2403	1	1	0	0	0	0	copy fasta	SART1	chr11	65956734	65985137
SART1_chr11_65956734_65985137	0/0	c0021	2403	1	1	0	0	0	0	copy fasta	SART1	chr11	65956734	65985137
SART1_chr11_65956734_65985137	0/0	c0022	2403	1	0	0	0	0	1	copy fasta	SART1	chr11	65956734	65985137
SART3_chr12_108517214_108566173	0/1	c0001	2892	162	22	22	91	6	20	copy fasta	SART3	chr12	108517214	108566173
SART3_chr12_108517214_108566173	0/0	c0002	2892	65	5	15	42	2	1	copy fasta	SART3	chr12	108517214	108566173
SART3_chr12_108517214_108566173	1/0	c0003	2892	55	30	5	16	2	1	copy fasta	SART3	chr12	108517214	108566173
SART3_chr12_108517214_108566173	0/0	c0004	2892	53	3	9	28	1	12	copy fasta	SART3	chr12	108517214	108566173
SART3_chr12_108517214_108566173	0/0	c0005	2892	18	9	1	2	1	5	copy fasta	SART3	chr12	108517214	108566173
SART3_chr12_108517214_108566173	0/0	c0006	2892	12	11	1	0	0	0	copy fasta	SART3	chr12	108517214	108566173
SART3_chr12_108517214_108566173	0/0	c0007	2892	9	8	1	0	0	0	copy fasta	SART3	chr12	108517214	108566173
SART3_chr12_108517214_108566173	0/0	c0008	2892	5	0	0	5	0	0	copy fasta	SART3	chr12	108517214	108566173
SART3_chr12_108517214_108566173	0/0	c0009	2892	3	2	1	0	0	0	copy fasta	SART3	chr12	108517214	108566173
SART3_chr12_108517214_108566173	0/0	c0010	2892	2	2	0	0	0	0	copy fasta	SART3	chr12	108517214	108566173
SART3_chr12_108517214_108566173	0/0	c0011	2892	2	0	2	0	0	0	copy fasta	SART3	chr12	108517214	108566173
SART3_chr12_108517214_108566173	0/0	c0012	2892	2	2	0	0	0	0	copy fasta	SART3	chr12	108517214	108566173
SART3_chr12_108517214_108566173	0/0	c0013	2892	1	0	0	1	0	0	copy fasta	SART3	chr12	108517214	108566173
SART3_chr12_108517214_108566173	0/0	c0014	2892	1	0	0	1	0	0	copy fasta	SART3	chr12	108517214	108566173
SART3_chr12_108517214_108566173	0/0	c0015	2892	1	0	0	0	0	1	copy fasta	SART3	chr12	108517214	108566173
SART3_chr12_108517214_108566173	0/0	c0016	2892	1	1	0	0	0	0	copy fasta	SART3	chr12	108517214	108566173
SART3_chr12_108517214_108566173	0/0	c0017	2892	1	1	0	0	0	0	copy fasta	SART3	chr12	108517214	108566173
SART3_chr12_108517214_108566173	0/0	c0018	2892	1	0	1	0	0	0	copy fasta	SART3	chr12	108517214	108566173
SASH1_chr6_148337838_148557044	0/1	c0001	3744	96	23	26	22	7	17	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	1/0	c0002	3744	86	15	12	47	4	7	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	c0003	3744	32	23	1	4	0	4	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	c0004	3744	16	9	1	3	1	2	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	c0005	3744	14	1	6	6	0	1	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	c0006	3750	12	0	5	3	0	4	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	c0007	3744	10	4	0	2	0	4	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	c0008	3750	9	0	1	8	0	0	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	c0009	3744	5	2	0	1	0	2	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	c0010	3744	4	0	4	0	0	0	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	c0011	3750	3	0	0	1	2	0	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	c0012	3744	3	2	1	0	0	0	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	c0013	3744	2	0	1	1	0	0	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	c0014	3744	2	0	0	2	0	0	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	c0015	3744	2	2	0	0	0	0	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	c0016	3744	2	0	0	2	0	0	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	c0017	3744	2	0	0	2	0	0	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	c0018	3750	1	0	0	1	0	0	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	c0019	3750	1	0	1	0	0	0	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	c0020	3750	1	0	0	1	0	0	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	c0021	3744	1	1	0	0	0	0	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	c0022	3744	1	0	1	0	0	0	copy fasta	SASH1	chr6	148337838	148557044