JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SASH1_chr6_148337838_148557044	0/0	c0023	3744	1	1	0	0	0	0	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	c0024	3744	1	0	0	1	0	0	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	c0025	3744	1	0	0	1	0	0	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	c0026	3744	1	1	0	0	0	0	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	c0027	3744	1	0	0	1	0	0	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	c0028	3744	1	0	0	1	0	0	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	c0029	3744	1	0	0	1	0	0	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	c0030	3744	1	0	0	1	0	0	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	c0031	3744	1	0	0	0	0	1	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	c0032	3744	1	0	1	0	0	0	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	c0033	3744	1	0	0	1	0	0	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	c0034	3744	1	0	0	1	0	0	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	c0035	3744	1	1	0	0	0	0	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	c0036	3744	1	0	0	1	0	0	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	c0037	3744	1	0	1	0	0	0	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	c0038	3744	1	1	0	0	0	0	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	c0039	3744	1	0	0	1	0	0	copy fasta	SASH1	chr6	148337838	148557044
SASH3_chrX_129774949_129800201	1/1	c0001	1143	297	75	46	132	11	31	copy fasta	SASH3	chrX	129774949	129800201
SASH3_chrX_129774949_129800201	0/0	c0002	1143	1	1	0	0	0	0	copy fasta	SASH3	chrX	129774949	129800201
SASH3_chrX_129774949_129800201	0/0	c0003	1143	1	0	0	1	0	0	copy fasta	SASH3	chrX	129774949	129800201
SASH3_chrX_129774949_129800201	0/0	c0004	1143	1	1	0	0	0	0	copy fasta	SASH3	chrX	129774949	129800201
SASH3_chrX_129774949_129800201	0/0	c0005	1143	1	0	0	0	0	1	copy fasta	SASH3	chrX	129774949	129800201
SASH3_chrX_129774949_129800201	0/0	c0006	1143	1	0	0	1	0	0	copy fasta	SASH3	chrX	129774949	129800201
SASH3_chrX_129774949_129800201	0/0	c0007	1143	1	1	0	0	0	0	copy fasta	SASH3	chrX	129774949	129800201
SASH3_chrX_129774949_129800201	0/0	c0008	1140	1	0	0	1	0	0	copy fasta	SASH3	chrX	129774949	129800201
SASH3_chrX_129774949_129800201	0/0	c0009	1144	1	0	0	1	0	0	copy fasta	SASH3	chrX	129774949	129800201
SASH3_chrX_129774949_129800201	0/0	c0010	1143	1	0	0	1	0	0	copy fasta	SASH3	chrX	129774949	129800201
SASH3_chrX_129774949_129800201	0/0	c0011	1143	1	0	0	1	0	0	copy fasta	SASH3	chrX	129774949	129800201
SASS6_chr1_100078570_100137930	1/1	c0001	1974	192	76	29	58	6	21	copy fasta	SASS6	chr1	100078570	100137930
SASS6_chr1_100078570_100137930	0/0	c0002	1974	97	4	23	57	3	10	copy fasta	SASS6	chr1	100078570	100137930
SASS6_chr1_100078570_100137930	0/0	c0003	1974	5	4	1	0	0	0	copy fasta	SASS6	chr1	100078570	100137930
SASS6_chr1_100078570_100137930	0/0	c0004	1974	3	0	1	0	1	1	copy fasta	SASS6	chr1	100078570	100137930
SASS6_chr1_100078570_100137930	0/0	c0005	1974	2	0	0	2	0	0	copy fasta	SASS6	chr1	100078570	100137930
SASS6_chr1_100078570_100137930	0/0	c0006	1974	1	0	0	0	0	1	copy fasta	SASS6	chr1	100078570	100137930
SASS6_chr1_100078570_100137930	0/0	c0007	1974	1	1	0	0	0	0	copy fasta	SASS6	chr1	100078570	100137930
SASS6_chr1_100078570_100137930	0/0	c0008	1974	1	0	0	1	0	0	copy fasta	SASS6	chr1	100078570	100137930
SASS6_chr1_100078570_100137930	0/0	c0009	1974	1	1	0	0	0	0	copy fasta	SASS6	chr1	100078570	100137930
SASS6_chr1_100078570_100137930	0/0	c0010	1974	1	0	0	0	0	1	copy fasta	SASS6	chr1	100078570	100137930
SAT1_chrX_23778173_23791210	1/1	c0001	516	325	74	61	145	13	30	copy fasta	SAT1	chrX	23778173	23791210
SAT1_chrX_23778173_23791210	0/0	c0002	516	3	3	0	0	0	0	copy fasta	SAT1	chrX	23778173	23791210
SAT1_chrX_23778173_23791210	0/0	c0003	516	1	1	0	0	0	0	copy fasta	SAT1	chrX	23778173	23791210
SAT1_chrX_23778173_23791210	0/0	c0004	517	1	0	0	1	0	0	copy fasta	SAT1	chrX	23778173	23791210
SAT2_chr17_7621234_7632821	1/1	c0001	513	279	59	58	129	10	21	copy fasta	SAT2	chr17	7621234	7632821
SAT2_chr17_7621234_7632821	0/0	c0002	513	106	3	17	59	4	23	copy fasta	SAT2	chr17	7621234	7632821
SAT2_chr17_7621234_7632821	0/0	c0003	513	30	11	5	12	0	2	copy fasta	SAT2	chr17	7621234	7632821
SAT2_chr17_7621234_7632821	0/0	c0004	513	17	17	0	0	0	0	copy fasta	SAT2	chr17	7621234	7632821
SATB1_chr3_18340377_18430339	0/1	c0001	2292	248	36	35	138	9	29	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	1/0	c0002	2292	87	39	23	12	3	9	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	c0003	2292	8	8	0	0	0	0	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	c0004	2292	3	3	0	0	0	0	copy fasta	SATB1	chr3	18340377	18430339