JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SATB1_chr3_18340377_18430339	0/0	c0005	2292	2	0	0	2	0	0	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	c0006	2292	2	2	0	0	0	0	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	c0007	2292	1	0	1	0	0	0	copy fasta	SATB1	chr3	18340377	18430339
SATB1_chr3_18340377_18430339	0/0	c0008	2292	1	0	1	0	0	0	copy fasta	SATB1	chr3	18340377	18430339
SATB2_chr2_199264505_199462939	1/1	c0001	2202	248	71	48	87	8	32	copy fasta	SATB2	chr2	199264505	199462939
SATB2_chr2_199264505_199462939	0/0	c0002	2202	3	3	0	0	0	0	copy fasta	SATB2	chr2	199264505	199462939
SATB2_chr2_199264505_199462939	0/0	c0003	2202	2	0	2	0	0	0	copy fasta	SATB2	chr2	199264505	199462939
SATB2_chr2_199264505_199462939	0/0	c0004	2202	1	0	0	1	0	0	copy fasta	SATB2	chr2	199264505	199462939
SATL1_chrX_85087284_85248779	0/0	c0001	2088	134	35	15	63	3	18	copy fasta	SATL1	chrX	85087284	85248779
SATL1_chrX_85087284_85248779	1/1	c0002	2088	57	7	12	33	2	1	copy fasta	SATL1	chrX	85087284	85248779
SATL1_chrX_85087284_85248779	0/0	c0003	2088	15	11	2	2	0	0	copy fasta	SATL1	chrX	85087284	85248779
SATL1_chrX_85087284_85248779	0/0	c0004	2088	11	8	3	0	0	0	copy fasta	SATL1	chrX	85087284	85248779
SATL1_chrX_85087284_85248779	0/0	c0005	2088	3	3	0	0	0	0	copy fasta	SATL1	chrX	85087284	85248779
SATL1_chrX_85087284_85248779	0/0	c0006	2088	2	2	0	0	0	0	copy fasta	SATL1	chrX	85087284	85248779
SATL1_chrX_85087284_85248779	0/0	c0007	2088	2	0	0	0	0	2	copy fasta	SATL1	chrX	85087284	85248779
SATL1_chrX_85087284_85248779	0/0	c0008	2088	1	0	0	0	0	1	copy fasta	SATL1	chrX	85087284	85248779
SATL1_chrX_85087284_85248779	0/0	c0009	2088	1	0	0	1	0	0	copy fasta	SATL1	chrX	85087284	85248779
SATL1_chrX_85087284_85248779	0/0	c0010	2088	1	1	0	0	0	0	copy fasta	SATL1	chrX	85087284	85248779
SATL1_chrX_85087284_85248779	0/0	c0011	2088	1	0	0	1	0	0	copy fasta	SATL1	chrX	85087284	85248779
SATL1_chrX_85087284_85248779	0/0	c0012	2088	1	0	0	1	0	0	copy fasta	SATL1	chrX	85087284	85248779
SATL1_chrX_85087284_85248779	0/0	c0013	2088	1	1	0	0	0	0	copy fasta	SATL1	chrX	85087284	85248779
SATL1_chrX_85087284_85248779	0/0	c0014	1362	1	1	0	0	0	0	copy fasta	SATL1	chrX	85087284	85248779
SATL1_chrX_85087284_85248779	0/0	c0015	2088	1	1	0	0	0	0	copy fasta	SATL1	chrX	85087284	85248779
SAV1_chr14_50628580_50673306	1/1	c0001	1152	377	91	76	155	14	39	copy fasta	SAV1	chr14	50628580	50673306
SAV1_chr14_50628580_50673306	0/0	c0002	1152	8	6	2	0	0	0	copy fasta	SAV1	chr14	50628580	50673306
SAV1_chr14_50628580_50673306	0/0	c0003	1152	3	3	0	0	0	0	copy fasta	SAV1	chr14	50628580	50673306
SAV1_chr14_50628580_50673306	0/0	c0004	1152	1	0	0	1	0	0	copy fasta	SAV1	chr14	50628580	50673306
SAV1_chr14_50628580_50673306	0/0	c0005	1152	1	0	0	0	0	1	copy fasta	SAV1	chr14	50628580	50673306
SAXO1_chr9_18922650_19038209	0/1	c0001	1425	153	12	31	75	11	23	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	1/0	c0002	1425	93	4	17	61	3	7	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	c0003	1425	62	42	4	9	0	7	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	c0004	1425	9	8	1	0	0	0	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	c0005	1425	6	0	0	6	0	0	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	c0006	1425	4	0	0	4	0	0	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	c0007	1425	4	0	0	0	0	4	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	c0008	1425	3	0	1	0	2	0	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	c0009	1425	3	3	0	0	0	0	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	c0010	1425	3	2	0	1	0	0	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	c0011	1425	2	0	0	2	0	0	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	c0012	1425	2	0	0	2	0	0	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	c0013	1425	2	2	0	0	0	0	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	c0014	1425	2	2	0	0	0	0	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	c0015	1425	2	2	0	0	0	0	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	c0016	1425	2	1	1	0	0	0	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	c0017	1425	1	1	0	0	0	0	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	c0018	1425	1	0	0	0	0	1	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	c0019	1425	1	0	0	0	0	1	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	c0020	1425	1	1	0	0	0	0	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	c0021	1425	1	1	0	0	0	0	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	c0022	1425	1	1	0	0	0	0	copy fasta	SAXO1	chr9	18922650	19038209