JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SAXO1_chr9_18922650_19038209	0/0	c0023	1425	1	1	0	0	0	0	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	c0024	1425	1	0	1	0	0	0	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	c0025	1425	1	0	0	1	0	0	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	c0026	1425	1	1	0	0	0	0	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	c0027	1425	1	0	0	1	0	0	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	c0028	1425	1	0	0	0	0	1	copy fasta	SAXO1	chr9	18922650	19038209
SAXO2_chr15_82257818_82289927	1/0	c0001	1377	149	5	30	101	2	10	copy fasta	SAXO2	chr15	82257818	82289927
SAXO2_chr15_82257818_82289927	0/0	c0002	1377	96	44	13	31	3	5	copy fasta	SAXO2	chr15	82257818	82289927
SAXO2_chr15_82257818_82289927	0/0	c0003	1377	82	12	8	39	5	18	copy fasta	SAXO2	chr15	82257818	82289927
SAXO2_chr15_82257818_82289927	0/1	c0004	1377	33	10	9	4	5	4	copy fasta	SAXO2	chr15	82257818	82289927
SAXO2_chr15_82257818_82289927	0/0	c0005	1377	17	0	1	14	0	2	copy fasta	SAXO2	chr15	82257818	82289927
SAXO2_chr15_82257818_82289927	0/0	c0006	1377	5	5	0	0	0	0	copy fasta	SAXO2	chr15	82257818	82289927
SAXO2_chr15_82257818_82289927	0/0	c0007	1377	4	0	3	0	1	0	copy fasta	SAXO2	chr15	82257818	82289927
SAXO2_chr15_82257818_82289927	0/0	c0008	1377	4	4	0	0	0	0	copy fasta	SAXO2	chr15	82257818	82289927
SAXO2_chr15_82257818_82289927	0/0	c0009	1377	4	0	0	4	0	0	copy fasta	SAXO2	chr15	82257818	82289927
SAXO2_chr15_82257818_82289927	0/0	c0010	1377	2	2	0	0	0	0	copy fasta	SAXO2	chr15	82257818	82289927
SAXO2_chr15_82257818_82289927	0/0	c0011	1377	2	2	0	0	0	0	copy fasta	SAXO2	chr15	82257818	82289927
SAXO2_chr15_82257818_82289927	0/0	c0012	1377	2	0	0	2	0	0	copy fasta	SAXO2	chr15	82257818	82289927
SAXO2_chr15_82257818_82289927	0/0	c0013	1377	1	0	0	1	0	0	copy fasta	SAXO2	chr15	82257818	82289927
SAXO2_chr15_82257818_82289927	0/0	c0014	1377	1	1	0	0	0	0	copy fasta	SAXO2	chr15	82257818	82289927
SAXO2_chr15_82257818_82289927	0/0	c0015	1377	1	0	0	1	0	0	copy fasta	SAXO2	chr15	82257818	82289927
SAXO2_chr15_82257818_82289927	0/0	c0016	1377	1	1	0	0	0	0	copy fasta	SAXO2	chr15	82257818	82289927
SAXO2_chr15_82257818_82289927	0/0	c0017	1377	1	0	0	0	0	1	copy fasta	SAXO2	chr15	82257818	82289927
SAXO2_chr15_82257818_82289927	0/0	c0018	1377	1	0	0	1	0	0	copy fasta	SAXO2	chr15	82257818	82289927
SAYSD1_chr6_39099063_39120186	1/1	c0001	552	450	96	78	208	18	48	copy fasta	SAYSD1	chr6	39099063	39120186
SAYSD1_chr6_39099063_39120186	0/0	c0002	534	3	0	0	3	0	0	copy fasta	SAYSD1	chr6	39099063	39120186
SAYSD1_chr6_39099063_39120186	0/0	c0003	552	2	1	1	0	0	0	copy fasta	SAYSD1	chr6	39099063	39120186
SAYSD1_chr6_39099063_39120186	0/0	c0004	552	2	2	0	0	0	0	copy fasta	SAYSD1	chr6	39099063	39120186
SAYSD1_chr6_39099063_39120186	0/0	c0005	552	1	0	1	0	0	0	copy fasta	SAYSD1	chr6	39099063	39120186
SAYSD1_chr6_39099063_39120186	0/0	c0006	552	1	1	0	0	0	0	copy fasta	SAYSD1	chr6	39099063	39120186
SAYSD1_chr6_39099063_39120186	0/0	c0007	552	1	0	0	1	0	0	copy fasta	SAYSD1	chr6	39099063	39120186
SBDS_chr7_66982680_67000586	1/0	c0001	753	403	87	67	191	14	43	copy fasta	SBDS	chr7	66982680	67000586
SBDS_chr7_66982680_67000586	0/0	c0002	753	15	2	9	0	1	3	copy fasta	SBDS	chr7	66982680	67000586
SBDS_chr7_66982680_67000586	0/1	c0003	753	9	2	2	1	1	2	copy fasta	SBDS	chr7	66982680	67000586
SBDS_chr7_66982680_67000586	0/0	c0004	753	8	2	0	6	0	0	copy fasta	SBDS	chr7	66982680	67000586
SBDS_chr7_66982680_67000586	0/0	c0005	753	2	0	2	0	0	0	copy fasta	SBDS	chr7	66982680	67000586
SBDS_chr7_66982680_67000586	0/0	c0006	753	1	1	0	0	0	0	copy fasta	SBDS	chr7	66982680	67000586
SBF1_chr22_50440000_50480035	1/0	c0001	5682	83	21	20	22	7	12	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	c0002	5682	57	3	11	39	0	4	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/1	c0003	5682	54	5	15	18	3	12	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	c0004	5682	48	0	10	30	2	6	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	c0005	5682	19	0	0	19	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	c0006	5682	12	4	0	7	0	1	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	c0007	5682	10	10	0	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	c0008	5682	10	10	0	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	c0009	5682	9	1	7	1	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	c0010	5682	9	9	0	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	c0011	5682	6	5	1	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	c0012	5682	3	0	0	3	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	c0013	5682	3	0	0	3	0	0	copy fasta	SBF1	chr22	50440000	50480035