JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SBF1_chr22_50440000_50480035	0/0	c0064	5682	1	0	0	1	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	c0065	5682	1	0	0	1	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	c0066	5682	1	0	0	1	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	c0067	5682	1	0	0	0	0	1	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	c0068	5682	1	1	0	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	c0069	5682	1	0	0	1	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	c0070	5682	1	0	0	1	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	c0071	5682	1	0	0	1	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	c0072	5682	1	0	0	1	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	c0073	5682	1	0	0	0	0	1	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	c0074	5682	1	0	0	1	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	c0075	5682	1	1	0	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	c0076	5682	1	0	0	0	0	1	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	c0077	5682	1	1	0	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	c0078	5682	1	1	0	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	c0079	5682	1	1	0	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	c0080	5682	1	1	0	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF2_chr11_9773668_10299219	1/1	c0001	5550	146	41	36	46	5	16	copy fasta	SBF2	chr11	9773668	10299219
SBF2_chr11_9773668_10299219	0/0	c0002	5550	22	1	9	8	2	2	copy fasta	SBF2	chr11	9773668	10299219
SBF2_chr11_9773668_10299219	0/0	c0003	5550	15	2	5	3	1	4	copy fasta	SBF2	chr11	9773668	10299219
SBF2_chr11_9773668_10299219	0/0	c0004	5524	11	0	4	7	0	0	copy fasta	SBF2	chr11	9773668	10299219
SBF2_chr11_9773668_10299219	0/0	c0005	5550	7	6	1	0	0	0	copy fasta	SBF2	chr11	9773668	10299219
SBF2_chr11_9773668_10299219	0/0	c0006	5550	3	0	3	0	0	0	copy fasta	SBF2	chr11	9773668	10299219
SBF2_chr11_9773668_10299219	0/0	c0007	5550	3	3	0	0	0	0	copy fasta	SBF2	chr11	9773668	10299219
SBF2_chr11_9773668_10299219	0/0	c0008	5550	2	0	2	0	0	0	copy fasta	SBF2	chr11	9773668	10299219
SBF2_chr11_9773668_10299219	0/0	c0009	5550	2	2	0	0	0	0	copy fasta	SBF2	chr11	9773668	10299219
SBF2_chr11_9773668_10299219	0/0	c0010	5550	2	2	0	0	0	0	copy fasta	SBF2	chr11	9773668	10299219
SBF2_chr11_9773668_10299219	0/0	c0011	5550	1	0	0	0	0	1	copy fasta	SBF2	chr11	9773668	10299219
SBF2_chr11_9773668_10299219	0/0	c0012	5550	1	1	0	0	0	0	copy fasta	SBF2	chr11	9773668	10299219
SBF2_chr11_9773668_10299219	0/0	c0013	5550	1	1	0	0	0	0	copy fasta	SBF2	chr11	9773668	10299219
SBF2_chr11_9773668_10299219	0/0	c0014	5550	1	0	0	0	0	1	copy fasta	SBF2	chr11	9773668	10299219
SBF2_chr11_9773668_10299219	0/0	c0015	5550	1	1	0	0	0	0	copy fasta	SBF2	chr11	9773668	10299219
SBF2_chr11_9773668_10299219	0/0	c0016	5550	1	0	0	1	0	0	copy fasta	SBF2	chr11	9773668	10299219
SBF2_chr11_9773668_10299219	0/0	c0017	5550	1	1	0	0	0	0	copy fasta	SBF2	chr11	9773668	10299219
SBF2_chr11_9773668_10299219	0/0	c0018	5550	1	1	0	0	0	0	copy fasta	SBF2	chr11	9773668	10299219
SBF2_chr11_9773668_10299219	0/0	c0019	5550	1	0	0	1	0	0	copy fasta	SBF2	chr11	9773668	10299219
SBF2_chr11_9773668_10299219	0/0	c0020	5550	1	0	1	0	0	0	copy fasta	SBF2	chr11	9773668	10299219
SBF2_chr11_9773668_10299219	0/0	c0021	5550	1	0	1	0	0	0	copy fasta	SBF2	chr11	9773668	10299219
SBK1_chr16_28287525_28328849	1/1	c0001	1275	367	92	63	164	13	33	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	c0002	1275	5	0	5	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	c0003	1275	4	4	0	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	c0004	1275	2	0	0	0	1	1	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	c0005	1251	2	0	0	2	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	c0006	1251	1	0	0	1	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	c0007	1275	1	0	1	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	c0008	1275	1	0	0	1	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	c0009	1275	1	0	1	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK2_chr19_55523611_55542133	0/1	c0001	1047	287	61	54	127	17	27	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	c0002	1047	36	2	4	24	0	6	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	c0003	1048	29	5	4	11	0	9	copy fasta	SBK2	chr19	55523611	55542133