JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SBK2_chr19_55523611_55542133	0/0	c0004	1047	24	4	12	3	1	4	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	c0005	1047	23	3	2	17	0	1	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	c0006	1047	5	5	0	0	0	0	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	c0007	1048	4	0	1	3	0	0	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	c0008	1047	3	2	1	0	0	0	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	c0009	1047	2	2	0	0	0	0	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	1/0	c0010	1047	2	0	0	0	0	1	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	c0011	1047	2	0	0	2	0	0	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	c0012	1047	1	0	0	1	0	0	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	c0013	1047	1	0	0	1	0	0	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	c0014	1047	1	0	0	1	0	0	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	c0015	1047	1	1	0	0	0	0	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	c0016	1047	1	0	0	1	0	0	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	c0017	1048	1	0	0	1	0	0	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	c0018	1047	1	0	1	0	0	0	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	c0019	1047	1	1	0	0	0	0	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	c0020	1047	1	0	0	1	0	0	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	c0021	1047	1	1	0	0	0	0	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	c0022	1047	1	1	0	0	0	0	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	c0023	1047	1	1	0	0	0	0	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	c0024	1047	1	1	0	0	0	0	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	c0025	1048	1	0	1	0	0	0	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	c0026	1047	1	0	0	1	0	0	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	c0027	1047	1	0	0	1	0	0	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	c0028	1047	1	0	0	1	0	0	copy fasta	SBK2	chr19	55523611	55542133
SBK3_chr19_55535656_55550543	0/1	c0001	1080	281	76	58	105	13	28	copy fasta	SBK3	chr19	55535656	55550543
SBK3_chr19_55535656_55550543	1/0	c0002	1080	94	12	8	58	1	14	copy fasta	SBK3	chr19	55535656	55550543
SBK3_chr19_55535656_55550543	0/0	c0003	1080	32	1	1	30	0	0	copy fasta	SBK3	chr19	55535656	55550543
SBK3_chr19_55535656_55550543	0/0	c0004	1080	7	0	4	0	2	1	copy fasta	SBK3	chr19	55535656	55550543
SBK3_chr19_55535656_55550543	0/0	c0005	1080	6	0	2	0	0	4	copy fasta	SBK3	chr19	55535656	55550543
SBK3_chr19_55535656_55550543	0/0	c0006	1080	3	3	0	0	0	0	copy fasta	SBK3	chr19	55535656	55550543
SBK3_chr19_55535656_55550543	0/0	c0007	1080	3	0	2	0	0	1	copy fasta	SBK3	chr19	55535656	55550543
SBK3_chr19_55535656_55550543	0/0	c0008	1080	3	0	1	0	2	0	copy fasta	SBK3	chr19	55535656	55550543
SBK3_chr19_55535656_55550543	0/0	c0009	1080	2	0	2	0	0	0	copy fasta	SBK3	chr19	55535656	55550543
SBK3_chr19_55535656_55550543	0/0	c0010	1080	1	1	0	0	0	0	copy fasta	SBK3	chr19	55535656	55550543
SBK3_chr19_55535656_55550543	0/0	c0011	1080	1	1	0	0	0	0	copy fasta	SBK3	chr19	55535656	55550543
SBK3_chr19_55535656_55550543	0/0	c0012	1080	1	1	0	0	0	0	copy fasta	SBK3	chr19	55535656	55550543
SBK3_chr19_55535656_55550543	0/0	c0013	1080	1	1	0	0	0	0	copy fasta	SBK3	chr19	55535656	55550543
SBK3_chr19_55535656_55550543	0/0	c0014	1080	1	0	0	1	0	0	copy fasta	SBK3	chr19	55535656	55550543
SBK3_chr19_55535656_55550543	0/0	c0015	1080	1	0	0	1	0	0	copy fasta	SBK3	chr19	55535656	55550543
SBK3_chr19_55535656_55550543	0/0	c0016	1080	1	0	0	1	0	0	copy fasta	SBK3	chr19	55535656	55550543
SBNO1_chr12_123284109_123369847	0/0	c0001	4182	88	2	28	42	4	12	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	c0002	4182	42	2	5	33	0	2	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	c0003	4182	35	34	1	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/1	c0004	4182	31	6	14	0	3	7	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	c0005	4182	24	22	2	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	1/0	c0006	4182	14	3	4	3	1	2	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	c0007	4182	9	0	1	4	0	4	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	c0008	4182	4	4	0	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	c0009	4182	3	3	0	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847