JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SBNO1_chr12_123284109_123369847	0/0	c0010	4182	2	2	0	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	c0011	4182	2	0	0	0	0	2	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	c0012	4182	1	1	0	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	c0013	4182	1	1	0	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	c0014	4182	1	0	0	1	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	c0015	4182	1	0	1	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	c0016	4182	1	0	0	0	0	1	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	c0017	4182	1	0	0	1	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO2_chr19_1102638_1179268	0/1	c0001	4101	47	14	9	16	2	5	copy fasta	SBNO2	chr19	1102638	1179268
SBNO2_chr19_1102638_1179268	0/0	c0002	4101	29	1	13	6	4	5	copy fasta	SBNO2	chr19	1102638	1179268
SBNO2_chr19_1102638_1179268	0/0	c0003	4101	18	1	3	10	2	2	copy fasta	SBNO2	chr19	1102638	1179268
SBNO2_chr19_1102638_1179268	0/0	c0004	4101	13	12	1	0	0	0	copy fasta	SBNO2	chr19	1102638	1179268
SBNO2_chr19_1102638_1179268	0/0	c0005	4101	10	1	2	3	0	4	copy fasta	SBNO2	chr19	1102638	1179268
SBNO2_chr19_1102638_1179268	0/0	c0006	4101	9	9	0	0	0	0	copy fasta	SBNO2	chr19	1102638	1179268
SBNO2_chr19_1102638_1179268	0/0	c0007	4101	9	3	4	2	0	0	copy fasta	SBNO2	chr19	1102638	1179268
SBNO2_chr19_1102638_1179268	0/0	c0008	4101	7	0	6	0	0	1	copy fasta	SBNO2	chr19	1102638	1179268
SBNO2_chr19_1102638_1179268	0/0	c0009	4102	6	0	1	5	0	0	copy fasta	SBNO2	chr19	1102638	1179268
SBNO2_chr19_1102638_1179268	0/0	c0010	4101	5	5	0	0	0	0	copy fasta	SBNO2	chr19	1102638	1179268
SBNO2_chr19_1102638_1179268	0/0	c0011	4101	5	4	1	0	0	0	copy fasta	SBNO2	chr19	1102638	1179268
SBNO2_chr19_1102638_1179268	0/0	c0012	4101	5	5	0	0	0	0	copy fasta	SBNO2	chr19	1102638	1179268
SBNO2_chr19_1102638_1179268	0/0	c0013	4101	5	0	0	2	0	3	copy fasta	SBNO2	chr19	1102638	1179268
SBNO2_chr19_1102638_1179268	0/0	c0014	4102	3	0	0	3	0	0	copy fasta	SBNO2	chr19	1102638	1179268
SBNO2_chr19_1102638_1179268	0/0	c0015	4101	2	2	0	0	0	0	copy fasta	SBNO2	chr19	1102638	1179268
SBNO2_chr19_1102638_1179268	0/0	c0016	4101	2	2	0	0	0	0	copy fasta	SBNO2	chr19	1102638	1179268
SBNO2_chr19_1102638_1179268	0/0	c0017	4102	2	0	0	2	0	0	copy fasta	SBNO2	chr19	1102638	1179268
SBNO2_chr19_1102638_1179268	0/0	c0018	4101	1	1	0	0	0	0	copy fasta	SBNO2	chr19	1102638	1179268
SBNO2_chr19_1102638_1179268	0/0	c0019	4101	1	1	0	0	0	0	copy fasta	SBNO2	chr19	1102638	1179268
SBNO2_chr19_1102638_1179268	0/0	c0020	4101	1	1	0	0	0	0	copy fasta	SBNO2	chr19	1102638	1179268
SBNO2_chr19_1102638_1179268	0/0	c0021	4102	1	1	0	0	0	0	copy fasta	SBNO2	chr19	1102638	1179268
SBNO2_chr19_1102638_1179268	0/0	c0022	4101	1	0	0	1	0	0	copy fasta	SBNO2	chr19	1102638	1179268
SBNO2_chr19_1102638_1179268	0/0	c0023	4101	1	0	0	1	0	0	copy fasta	SBNO2	chr19	1102638	1179268
SBNO2_chr19_1102638_1179268	0/0	c0024	4101	1	1	0	0	0	0	copy fasta	SBNO2	chr19	1102638	1179268
SBNO2_chr19_1102638_1179268	0/0	c0025	4101	1	1	0	0	0	0	copy fasta	SBNO2	chr19	1102638	1179268
SBNO2_chr19_1102638_1179268	0/0	c0026	4101	1	0	1	0	0	0	copy fasta	SBNO2	chr19	1102638	1179268
SBNO2_chr19_1102638_1179268	0/0	c0027	4101	1	0	1	0	0	0	copy fasta	SBNO2	chr19	1102638	1179268
SBNO2_chr19_1102638_1179268	0/0	c0028	4101	1	0	1	0	0	0	copy fasta	SBNO2	chr19	1102638	1179268
SBNO2_chr19_1102638_1179268	0/0	c0029	4101	1	1	0	0	0	0	copy fasta	SBNO2	chr19	1102638	1179268
SBNO2_chr19_1102638_1179268	0/0	c0030	4101	1	1	0	0	0	0	copy fasta	SBNO2	chr19	1102638	1179268
SBNO2_chr19_1102638_1179268	0/0	c0031	4101	1	1	0	0	0	0	copy fasta	SBNO2	chr19	1102638	1179268
SBNO2_chr19_1102638_1179268	0/0	c0032	4101	1	1	0	0	0	0	copy fasta	SBNO2	chr19	1102638	1179268
SBNO2_chr19_1102638_1179268	0/0	c0033	4102	1	1	0	0	0	0	copy fasta	SBNO2	chr19	1102638	1179268
SBNO2_chr19_1102638_1179268	0/0	c0034	4101	1	0	1	0	0	0	copy fasta	SBNO2	chr19	1102638	1179268
SBNO2_chr19_1102638_1179268	0/0	c0035	4101	1	1	0	0	0	0	copy fasta	SBNO2	chr19	1102638	1179268
SBNO2_chr19_1102638_1179268	0/0	c0036	4101	1	0	1	0	0	0	copy fasta	SBNO2	chr19	1102638	1179268
SBNO2_chr19_1102638_1179268	0/0	c0037	4101	1	1	0	0	0	0	copy fasta	SBNO2	chr19	1102638	1179268
SBNO2_chr19_1102638_1179268	0/0	c0038	4101	1	0	1	0	0	0	copy fasta	SBNO2	chr19	1102638	1179268
SBNO2_chr19_1102638_1179268	0/0	c0039	4101	1	0	1	0	0	0	copy fasta	SBNO2	chr19	1102638	1179268
SBNO2_chr19_1102638_1179268	0/0	c0040	4101	1	0	1	0	0	0	copy fasta	SBNO2	chr19	1102638	1179268
SBNO2_chr19_1102638_1179268	0/0	c0041	4101	1	0	0	1	0	0	copy fasta	SBNO2	chr19	1102638	1179268
SBNO2_chr19_1102638_1179268	0/0	c0042	4102	1	0	1	0	0	0	copy fasta	SBNO2	chr19	1102638	1179268