JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ATG7_chr3_11267397_11562665	0/0	c0008	2112	1	1	0	0	0	0	copy fasta	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	c0009	2112	1	1	0	0	0	0	copy fasta	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	c0010	2112	1	1	0	0	0	0	copy fasta	ATG7	chr3	11267397	11562665
ATG9A_chr2_219214380_219234636	0/1	c0001	2520	234	40	66	86	16	25	copy fasta	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	1/0	c0002	2520	57	30	2	23	0	1	copy fasta	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	c0003	2520	25	4	8	8	0	5	copy fasta	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	c0004	2520	11	0	0	11	0	0	copy fasta	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	c0005	2520	5	5	0	0	0	0	copy fasta	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	c0006	2520	2	2	0	0	0	0	copy fasta	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	c0007	2520	2	2	0	0	0	0	copy fasta	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	c0008	2520	2	0	0	2	0	0	copy fasta	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	c0009	2520	2	0	2	0	0	0	copy fasta	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	c0010	2520	1	0	0	0	0	1	copy fasta	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	c0011	2520	1	0	0	1	0	0	copy fasta	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	c0012	2520	1	0	0	1	0	0	copy fasta	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	c0013	2520	1	0	0	0	0	1	copy fasta	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	c0014	2520	1	1	0	0	0	0	copy fasta	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	c0015	2520	1	1	0	0	0	0	copy fasta	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	c0016	2520	1	1	0	0	0	0	copy fasta	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	c0017	2520	1	0	0	0	0	1	copy fasta	ATG9A	chr2	219214380	219234636
ATG9B_chr7_151010151_151029494	0/1	c0001	2775	218	35	48	99	9	26	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	1/0	c0002	2775	66	6	10	25	8	16	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	c0003	2775	57	18	6	29	1	3	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	c0004	2775	30	1	3	24	0	2	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	c0005	2775	13	0	0	13	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	c0006	2775	12	0	0	12	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	c0007	2775	6	6	0	0	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	c0008	2772	5	4	1	0	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	c0009	2775	4	4	0	0	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	c0010	2775	3	3	0	0	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	c0011	2775	3	0	3	0	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	c0012	2775	3	1	2	0	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	c0013	2775	3	3	0	0	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	c0014	2775	2	1	1	0	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	c0015	2775	2	0	0	2	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	c0016	2772	2	2	0	0	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	c0017	2775	2	0	0	2	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	c0018	2775	2	0	2	0	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	c0019	2775	2	0	0	2	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	c0020	2775	2	2	0	0	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	c0021	2775	2	2	0	0	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	c0022	2772	2	2	0	0	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	c0023	2775	1	1	0	0	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	c0024	2775	1	0	0	1	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	c0025	2772	1	1	0	0	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	c0026	2772	1	1	0	0	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	c0027	2716	1	1	0	0	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	c0028	2775	1	0	0	1	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	c0029	2775	1	0	0	1	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	c0030	2775	1	0	0	1	0	0	copy fasta	ATG9B	chr7	151010151	151029494