JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SBNO2_chr19_1102638_1179268	0/0	c0043	4101	1	0	1	0	0	0	copy fasta	SBNO2	chr19	1102638	1179268
SBSN_chr19_35518367_35533311	1/0	c0001	1773	130	28	27	57	4	13	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/0	c0002	1773	103	2	17	73	1	10	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/0	c0003	1773	61	10	1	47	1	2	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/1	c0004	1989	57	12	18	16	2	8	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/0	c0005	1773	20	0	7	3	6	4	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/0	c0006	1773	10	10	0	0	0	0	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/0	c0007	1719	8	0	6	0	0	2	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/0	c0008	1773	6	6	0	0	0	0	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/0	c0009	1773	5	5	0	0	0	0	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/0	c0010	1773	4	0	0	2	0	2	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/0	c0011	1773	4	4	0	0	0	0	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/0	c0012	1773	3	2	1	0	0	0	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/0	c0013	1719	3	0	0	0	2	1	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/0	c0014	1719	3	3	0	0	0	0	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/0	c0015	1773	3	3	0	0	0	0	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/0	c0016	1989	2	2	0	0	0	0	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/0	c0017	1989	2	0	1	0	0	1	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/0	c0018	1773	2	0	0	2	0	0	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/0	c0019	1719	2	0	2	0	0	0	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/0	c0020	1773	1	0	0	1	0	0	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/0	c0021	1773	1	0	0	0	0	1	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/0	c0022	1773	1	0	1	0	0	0	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/0	c0023	1773	1	1	0	0	0	0	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/0	c0024	1719	1	0	1	0	0	0	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/0	c0025	1611	1	1	0	0	0	0	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/0	c0026	1773	1	0	0	1	0	0	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/0	c0027	1773	1	0	1	0	0	0	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/0	c0028	1773	1	0	1	0	0	0	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/0	c0029	2205	1	1	0	0	0	0	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/0	c0030	1989	1	0	1	0	0	0	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/0	c0031	1989	1	0	0	0	0	1	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/0	c0032	1773	1	0	0	0	0	1	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/0	c0033	1773	1	1	0	0	0	0	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/0	c0034	1773	1	0	0	1	0	0	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/0	c0035	1773	1	0	1	0	0	0	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/0	c0036	1773	1	0	0	1	0	0	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/0	c0037	1773	1	1	0	0	0	0	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/0	c0038	1719	1	1	0	0	0	0	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/0	c0039	1989	1	0	0	0	0	1	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/0	c0040	1773	1	1	0	0	0	0	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/0	c0041	1773	1	0	0	0	0	1	copy fasta	SBSN	chr19	35518367	35533311
SBSPON_chr8_73059543_73098172	1/1	c0001	795	159	13	39	89	5	11	copy fasta	SBSPON	chr8	73059543	73098172
SBSPON_chr8_73059543_73098172	0/0	c0002	795	113	27	23	35	3	25	copy fasta	SBSPON	chr8	73059543	73098172
SBSPON_chr8_73059543_73098172	0/0	c0003	795	49	27	11	0	6	5	copy fasta	SBSPON	chr8	73059543	73098172
SBSPON_chr8_73059543_73098172	0/0	c0004	795	38	4	3	31	0	0	copy fasta	SBSPON	chr8	73059543	73098172
SBSPON_chr8_73059543_73098172	0/0	c0005	795	33	11	2	19	0	1	copy fasta	SBSPON	chr8	73059543	73098172
SBSPON_chr8_73059543_73098172	0/0	c0006	795	17	11	2	2	0	2	copy fasta	SBSPON	chr8	73059543	73098172
SBSPON_chr8_73059543_73098172	0/0	c0007	795	2	2	0	0	0	0	copy fasta	SBSPON	chr8	73059543	73098172
SBSPON_chr8_73059543_73098172	0/0	c0008	795	2	0	0	2	0	0	copy fasta	SBSPON	chr8	73059543	73098172