JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SBSPON_chr8_73059543_73098172	0/0	c0009	795	1	1	0	0	0	0	copy fasta	SBSPON	chr8	73059543	73098172
SC5D_chr11_121287771_121318410	1/1	c0001	900	419	96	69	196	12	44	copy fasta	SC5D	chr11	121287771	121318410
SC5D_chr11_121287771_121318410	0/0	c0002	900	1	1	0	0	0	0	copy fasta	SC5D	chr11	121287771	121318410
SC5D_chr11_121287771_121318410	0/0	c0003	900	1	0	0	1	0	0	copy fasta	SC5D	chr11	121287771	121318410
SC5D_chr11_121287771_121318410	0/0	c0004	900	1	1	0	0	0	0	copy fasta	SC5D	chr11	121287771	121318410
SC5D_chr11_121287771_121318410	0/0	c0005	900	1	0	1	0	0	0	copy fasta	SC5D	chr11	121287771	121318410
SC5D_chr11_121287771_121318410	0/0	c0006	900	1	0	0	1	0	0	copy fasta	SC5D	chr11	121287771	121318410
SCAF11_chr12_45914131_45995574	1/1	c0001	4392	157	23	45	66	6	15	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	c0002	4392	67	6	9	44	4	4	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	c0003	4392	30	2	5	17	2	4	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	c0004	4392	28	27	1	0	0	0	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	c0005	4392	10	5	0	0	0	5	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	c0006	4392	7	2	1	3	0	1	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	c0007	4392	6	4	2	0	0	0	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	c0008	4392	5	0	2	0	0	3	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	c0009	4392	4	0	0	4	0	0	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	c0010	4392	3	0	0	3	0	0	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	c0011	4392	3	0	0	1	0	2	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	c0012	4392	2	0	0	0	0	2	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	c0013	4392	2	2	0	0	0	0	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	c0014	4392	2	1	1	0	0	0	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	c0015	4392	2	2	0	0	0	0	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	c0016	4392	1	0	0	1	0	0	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	c0017	4392	1	0	0	0	0	1	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	c0018	4392	1	0	0	1	0	0	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	c0019	4392	1	1	0	0	0	0	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	c0020	4392	1	0	0	0	0	1	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	c0021	4392	1	0	0	0	0	1	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	c0022	4392	1	0	1	0	0	0	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	c0023	4392	1	0	0	1	0	0	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	c0024	4392	1	1	0	0	0	0	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	c0025	4392	1	0	0	0	0	1	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	c0026	4392	1	1	0	0	0	0	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	c0027	4392	1	0	0	1	0	0	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	c0028	4392	1	0	0	1	0	0	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	c0029	4392	1	1	0	0	0	0	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	c0030	4392	1	0	1	0	0	0	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	c0031	4392	1	0	0	1	0	0	copy fasta	SCAF11	chr12	45914131	45995574
SCAF1_chr19_49637209_49663642	0/0	c0001	3939	117	4	24	65	10	14	copy fasta	SCAF1	chr19	49637209	49663642
SCAF1_chr19_49637209_49663642	0/1	c0002	3933	116	49	19	26	4	17	copy fasta	SCAF1	chr19	49637209	49663642
SCAF1_chr19_49637209_49663642	0/0	c0003	3933	40	17	3	13	1	6	copy fasta	SCAF1	chr19	49637209	49663642
SCAF1_chr19_49637209_49663642	0/0	c0004	3933	22	0	12	10	0	0	copy fasta	SCAF1	chr19	49637209	49663642
SCAF1_chr19_49637209_49663642	0/0	c0005	3927	17	0	0	16	0	1	copy fasta	SCAF1	chr19	49637209	49663642
SCAF1_chr19_49637209_49663642	0/0	c0006	3939	8	0	7	0	0	1	copy fasta	SCAF1	chr19	49637209	49663642
SCAF1_chr19_49637209_49663642	0/0	c0007	3945	7	0	0	7	0	0	copy fasta	SCAF1	chr19	49637209	49663642
SCAF1_chr19_49637209_49663642	0/0	c0008	3933	6	0	6	0	0	0	copy fasta	SCAF1	chr19	49637209	49663642
SCAF1_chr19_49637209_49663642	0/0	c0009	3939	5	5	0	0	0	0	copy fasta	SCAF1	chr19	49637209	49663642
SCAF1_chr19_49637209_49663642	0/0	c0010	3939	4	0	0	4	0	0	copy fasta	SCAF1	chr19	49637209	49663642
SCAF1_chr19_49637209_49663642	0/0	c0011	3940	3	1	1	1	0	0	copy fasta	SCAF1	chr19	49637209	49663642
SCAF1_chr19_49637209_49663642	1/0	c0012	3939	3	1	0	0	0	1	copy fasta	SCAF1	chr19	49637209	49663642