JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SCAF1_chr19_49637209_49663642	0/0	c0013	3939	3	0	0	3	0	0	copy fasta	SCAF1	chr19	49637209	49663642
SCAF1_chr19_49637209_49663642	0/0	c0014	3933	3	3	0	0	0	0	copy fasta	SCAF1	chr19	49637209	49663642
SCAF1_chr19_49637209_49663642	0/0	c0015	3933	2	2	0	0	0	0	copy fasta	SCAF1	chr19	49637209	49663642
SCAF1_chr19_49637209_49663642	0/0	c0016	3939	2	0	1	0	1	0	copy fasta	SCAF1	chr19	49637209	49663642
SCAF1_chr19_49637209_49663642	0/0	c0017	3939	2	0	2	0	0	0	copy fasta	SCAF1	chr19	49637209	49663642
SCAF1_chr19_49637209_49663642	0/0	c0018	3933	2	0	0	2	0	0	copy fasta	SCAF1	chr19	49637209	49663642
SCAF1_chr19_49637209_49663642	0/0	c0019	3933	2	1	1	0	0	0	copy fasta	SCAF1	chr19	49637209	49663642
SCAF1_chr19_49637209_49663642	0/0	c0020	3933	1	1	0	0	0	0	copy fasta	SCAF1	chr19	49637209	49663642
SCAF1_chr19_49637209_49663642	0/0	c0021	3939	1	0	0	1	0	0	copy fasta	SCAF1	chr19	49637209	49663642
SCAF1_chr19_49637209_49663642	0/0	c0022	3929	1	0	0	1	0	0	copy fasta	SCAF1	chr19	49637209	49663642
SCAF1_chr19_49637209_49663642	0/0	c0023	3934	1	1	0	0	0	0	copy fasta	SCAF1	chr19	49637209	49663642
SCAF1_chr19_49637209_49663642	0/0	c0024	3940	1	0	1	0	0	0	copy fasta	SCAF1	chr19	49637209	49663642
SCAF1_chr19_49637209_49663642	0/0	c0025	3939	1	0	1	0	0	0	copy fasta	SCAF1	chr19	49637209	49663642
SCAF1_chr19_49637209_49663642	0/0	c0026	3921	1	1	0	0	0	0	copy fasta	SCAF1	chr19	49637209	49663642
SCAF1_chr19_49637209_49663642	0/0	c0027	3933	1	0	0	0	0	1	copy fasta	SCAF1	chr19	49637209	49663642
SCAF1_chr19_49637209_49663642	0/0	c0028	3933	1	0	1	0	0	0	copy fasta	SCAF1	chr19	49637209	49663642
SCAF1_chr19_49637209_49663642	0/0	c0029	3933	1	1	0	0	0	0	copy fasta	SCAF1	chr19	49637209	49663642
SCAF1_chr19_49637209_49663642	0/0	c0030	3939	1	0	1	0	0	0	copy fasta	SCAF1	chr19	49637209	49663642
SCAF1_chr19_49637209_49663642	0/0	c0031	3939	1	0	0	1	0	0	copy fasta	SCAF1	chr19	49637209	49663642
SCAF1_chr19_49637209_49663642	0/0	c0032	3939	1	0	0	1	0	0	copy fasta	SCAF1	chr19	49637209	49663642
SCAF1_chr19_49637209_49663642	0/0	c0033	3933	1	0	0	0	0	1	copy fasta	SCAF1	chr19	49637209	49663642
SCAF1_chr19_49637209_49663642	0/0	c0034	3939	1	0	0	1	0	0	copy fasta	SCAF1	chr19	49637209	49663642
SCAF1_chr19_49637209_49663642	0/0	c0035	3939	1	1	0	0	0	0	copy fasta	SCAF1	chr19	49637209	49663642
SCAF1_chr19_49637209_49663642	0/0	c0036	3933	1	1	0	0	0	0	copy fasta	SCAF1	chr19	49637209	49663642
SCAF1_chr19_49637209_49663642	0/0	c0037	3933	1	1	0	0	0	0	copy fasta	SCAF1	chr19	49637209	49663642
SCAF4_chr21_31666000_31737118	1/1	c0001	3444	269	44	53	130	9	31	copy fasta	SCAF4	chr21	31666000	31737118
SCAF4_chr21_31666000_31737118	0/0	c0002	3444	42	11	8	15	1	7	copy fasta	SCAF4	chr21	31666000	31737118
SCAF4_chr21_31666000_31737118	0/0	c0003	3444	13	11	2	0	0	0	copy fasta	SCAF4	chr21	31666000	31737118
SCAF4_chr21_31666000_31737118	0/0	c0004	3444	9	7	2	0	0	0	copy fasta	SCAF4	chr21	31666000	31737118
SCAF4_chr21_31666000_31737118	0/0	c0005	3444	3	0	3	0	0	0	copy fasta	SCAF4	chr21	31666000	31737118
SCAF4_chr21_31666000_31737118	0/0	c0006	3444	3	0	2	0	0	1	copy fasta	SCAF4	chr21	31666000	31737118
SCAF4_chr21_31666000_31737118	0/0	c0007	3444	2	0	0	2	0	0	copy fasta	SCAF4	chr21	31666000	31737118
SCAF4_chr21_31666000_31737118	0/0	c0008	3444	2	0	2	0	0	0	copy fasta	SCAF4	chr21	31666000	31737118
SCAF4_chr21_31666000_31737118	0/0	c0009	3444	1	0	1	0	0	0	copy fasta	SCAF4	chr21	31666000	31737118
SCAF4_chr21_31666000_31737118	0/0	c0010	3444	1	1	0	0	0	0	copy fasta	SCAF4	chr21	31666000	31737118
SCAF4_chr21_31666000_31737118	0/0	c0011	3444	1	1	0	0	0	0	copy fasta	SCAF4	chr21	31666000	31737118
SCAF4_chr21_31666000_31737118	0/0	c0012	3444	1	0	0	1	0	0	copy fasta	SCAF4	chr21	31666000	31737118
SCAF4_chr21_31666000_31737118	0/0	c0013	3444	1	0	1	0	0	0	copy fasta	SCAF4	chr21	31666000	31737118
SCAF4_chr21_31666000_31737118	0/0	c0014	3444	1	0	0	1	0	0	copy fasta	SCAF4	chr21	31666000	31737118
SCAF4_chr21_31666000_31737118	0/0	c0015	3444	1	0	0	0	0	1	copy fasta	SCAF4	chr21	31666000	31737118
SCAF4_chr21_31666000_31737118	0/0	c0016	3444	1	0	0	1	0	0	copy fasta	SCAF4	chr21	31666000	31737118
SCAF4_chr21_31666000_31737118	0/0	c0017	3444	1	1	0	0	0	0	copy fasta	SCAF4	chr21	31666000	31737118
SCAF8_chr6_154728416_154839221	1/0	c0001	3816	256	74	57	85	11	28	copy fasta	SCAF8	chr6	154728416	154839221
SCAF8_chr6_154728416_154839221	0/0	c0002	3816	6	0	5	0	0	1	copy fasta	SCAF8	chr6	154728416	154839221
SCAF8_chr6_154728416_154839221	0/0	c0003	3816	3	3	0	0	0	0	copy fasta	SCAF8	chr6	154728416	154839221
SCAF8_chr6_154728416_154839221	0/0	c0004	3816	3	2	0	0	0	1	copy fasta	SCAF8	chr6	154728416	154839221
SCAF8_chr6_154728416_154839221	0/0	c0005	3816	2	1	0	0	1	0	copy fasta	SCAF8	chr6	154728416	154839221
SCAF8_chr6_154728416_154839221	0/0	c0006	3816	2	2	0	0	0	0	copy fasta	SCAF8	chr6	154728416	154839221
SCAF8_chr6_154728416_154839221	0/0	c0007	3816	2	1	0	0	0	1	copy fasta	SCAF8	chr6	154728416	154839221
SCAF8_chr6_154728416_154839221	0/0	c0008	3816	1	1	0	0	0	0	copy fasta	SCAF8	chr6	154728416	154839221