JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SCAF8_chr6_154728416_154839221	0/0	c0009	3816	1	0	0	1	0	0	copy fasta	SCAF8	chr6	154728416	154839221
SCAF8_chr6_154728416_154839221	0/0	c0010	3816	1	0	0	1	0	0	copy fasta	SCAF8	chr6	154728416	154839221
SCAF8_chr6_154728416_154839221	0/0	c0011	3816	1	1	0	0	0	0	copy fasta	SCAF8	chr6	154728416	154839221
SCAF8_chr6_154728416_154839221	0/0	c0012	3816	1	1	0	0	0	0	copy fasta	SCAF8	chr6	154728416	154839221
SCAF8_chr6_154728416_154839221	0/0	c0013	3816	1	0	0	0	0	1	copy fasta	SCAF8	chr6	154728416	154839221
SCAF8_chr6_154728416_154839221	0/1	c0014	3816	1	0	0	0	0	0	copy fasta	SCAF8	chr6	154728416	154839221
SCAF8_chr6_154728416_154839221	0/0	c0015	3816	1	0	0	1	0	0	copy fasta	SCAF8	chr6	154728416	154839221
SCAI_chr9_124937608_125148528	1/1	c0001	1821	195	56	35	82	2	18	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	c0002	1821	66	9	11	38	3	5	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	c0003	1821	41	11	8	17	3	2	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	c0004	1821	1	0	0	0	0	1	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	c0005	1821	1	1	0	0	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	c0006	1821	1	1	0	0	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	c0007	1821	1	0	0	1	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAMP1_chr5_78355617_78485739	0/0	c0001	1017	264	82	36	114	10	22	copy fasta	SCAMP1	chr5	78355617	78485739
SCAMP1_chr5_78355617_78485739	0/0	c0002	1017	55	6	17	18	4	10	copy fasta	SCAMP1	chr5	78355617	78485739
SCAMP1_chr5_78355617_78485739	0/0	c0003	1017	10	9	1	0	0	0	copy fasta	SCAMP1	chr5	78355617	78485739
SCAMP1_chr5_78355617_78485739	0/0	c0004	1017	2	0	2	0	0	0	copy fasta	SCAMP1	chr5	78355617	78485739
SCAMP1_chr5_78355617_78485739	0/0	c0005	1017	1	1	0	0	0	0	copy fasta	SCAMP1	chr5	78355617	78485739
SCAMP2_chr15_74838730_74878365	1/1	c0001	990	362	84	60	169	14	33	copy fasta	SCAMP2	chr15	74838730	74878365
SCAMP2_chr15_74838730_74878365	0/0	c0002	990	11	0	2	8	0	1	copy fasta	SCAMP2	chr15	74838730	74878365
SCAMP2_chr15_74838730_74878365	0/0	c0003	990	4	0	1	0	3	0	copy fasta	SCAMP2	chr15	74838730	74878365
SCAMP2_chr15_74838730_74878365	0/0	c0004	990	4	4	0	0	0	0	copy fasta	SCAMP2	chr15	74838730	74878365
SCAMP2_chr15_74838730_74878365	0/0	c0005	990	2	0	1	0	1	0	copy fasta	SCAMP2	chr15	74838730	74878365
SCAMP2_chr15_74838730_74878365	0/0	c0006	990	1	0	0	1	0	0	copy fasta	SCAMP2	chr15	74838730	74878365
SCAMP2_chr15_74838730_74878365	0/0	c0007	990	1	0	0	1	0	0	copy fasta	SCAMP2	chr15	74838730	74878365
SCAMP2_chr15_74838730_74878365	0/0	c0008	990	1	0	0	1	0	0	copy fasta	SCAMP2	chr15	74838730	74878365
SCAMP3_chr1_155250981_155267360	0/0	c0001	1044	202	53	22	104	5	18	copy fasta	SCAMP3	chr1	155250981	155267360
SCAMP3_chr1_155250981_155267360	0/1	c0002	1044	163	43	26	53	13	27	copy fasta	SCAMP3	chr1	155250981	155267360
SCAMP3_chr1_155250981_155267360	0/0	c0003	1044	2	0	0	2	0	0	copy fasta	SCAMP3	chr1	155250981	155267360
SCAMP3_chr1_155250981_155267360	0/0	c0004	1044	1	0	0	1	0	0	copy fasta	SCAMP3	chr1	155250981	155267360
SCAMP3_chr1_155250981_155267360	0/0	c0005	1044	1	0	1	0	0	0	copy fasta	SCAMP3	chr1	155250981	155267360
SCAMP3_chr1_155250981_155267360	0/0	c0006	1044	1	0	0	1	0	0	copy fasta	SCAMP3	chr1	155250981	155267360
SCAMP3_chr1_155250981_155267360	0/0	c0007	1044	1	0	0	1	0	0	copy fasta	SCAMP3	chr1	155250981	155267360
SCAMP3_chr1_155250981_155267360	0/0	c0008	1044	1	0	0	1	0	0	copy fasta	SCAMP3	chr1	155250981	155267360
SCAMP3_chr1_155250981_155267360	0/0	c0009	1044	1	0	0	1	0	0	copy fasta	SCAMP3	chr1	155250981	155267360
SCAMP3_chr1_155250981_155267360	0/0	c0010	1044	1	0	0	0	0	1	copy fasta	SCAMP3	chr1	155250981	155267360
SCAMP3_chr1_155250981_155267360	0/0	c0011	1044	1	0	1	0	0	0	copy fasta	SCAMP3	chr1	155250981	155267360
SCAMP4_chr19_1900399_1931013	1/1	c0001	690	410	80	76	190	14	48	copy fasta	SCAMP4	chr19	1900399	1931013
SCAMP4_chr19_1900399_1931013	0/0	c0002	690	8	1	3	0	2	2	copy fasta	SCAMP4	chr19	1900399	1931013
SCAMP4_chr19_1900399_1931013	0/0	c0003	690	7	7	0	0	0	0	copy fasta	SCAMP4	chr19	1900399	1931013
SCAMP4_chr19_1900399_1931013	0/0	c0004	690	6	6	0	0	0	0	copy fasta	SCAMP4	chr19	1900399	1931013
SCAMP4_chr19_1900399_1931013	0/0	c0005	690	2	0	0	0	2	0	copy fasta	SCAMP4	chr19	1900399	1931013
SCAMP4_chr19_1900399_1931013	0/0	c0006	690	2	0	0	2	0	0	copy fasta	SCAMP4	chr19	1900399	1931013
SCAMP4_chr19_1900399_1931013	0/0	c0007	690	2	0	0	2	0	0	copy fasta	SCAMP4	chr19	1900399	1931013
SCAMP4_chr19_1900399_1931013	0/0	c0008	690	1	1	0	0	0	0	copy fasta	SCAMP4	chr19	1900399	1931013
SCAMP4_chr19_1900399_1931013	0/0	c0009	690	1	0	0	1	0	0	copy fasta	SCAMP4	chr19	1900399	1931013
SCAMP4_chr19_1900399_1931013	0/0	c0010	690	1	0	1	0	0	0	copy fasta	SCAMP4	chr19	1900399	1931013
SCAMP4_chr19_1900399_1931013	0/0	c0011	690	1	1	0	0	0	0	copy fasta	SCAMP4	chr19	1900399	1931013
SCAMP4_chr19_1900399_1931013	0/0	c0012	690	1	0	0	1	0	0	copy fasta	SCAMP4	chr19	1900399	1931013