JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SCAMP5_chr15_74990563_75026495	1/1	c0001	708	259	60	54	103	13	27	copy fasta	SCAMP5	chr15	74990563	75026495
SCAMP5_chr15_74990563_75026495	0/0	c0002	708	88	5	12	57	3	11	copy fasta	SCAMP5	chr15	74990563	75026495
SCAMP5_chr15_74990563_75026495	0/0	c0003	708	18	18	0	0	0	0	copy fasta	SCAMP5	chr15	74990563	75026495
SCAMP5_chr15_74990563_75026495	0/0	c0004	708	3	3	0	0	0	0	copy fasta	SCAMP5	chr15	74990563	75026495
SCAMP5_chr15_74990563_75026495	0/0	c0005	708	2	0	0	2	0	0	copy fasta	SCAMP5	chr15	74990563	75026495
SCAND1_chr20_35948624_35959502	1/1	c0001	540	374	86	74	154	14	44	copy fasta	SCAND1	chr20	35948624	35959502
SCAND3_chr6_28565535_28592298	0/0	c0001	3978	188	45	25	102	2	14	copy fasta	SCAND3	chr6	28565535	28592298
SCAND3_chr6_28565535_28592298	0/0	c0002	3978	122	6	27	67	7	15	copy fasta	SCAND3	chr6	28565535	28592298
SCAND3_chr6_28565535_28592298	0/1	c0003	3978	81	18	13	35	5	9	copy fasta	SCAND3	chr6	28565535	28592298
SCAND3_chr6_28565535_28592298	0/0	c0004	3978	11	8	3	0	0	0	copy fasta	SCAND3	chr6	28565535	28592298
SCAND3_chr6_28565535_28592298	0/0	c0005	3978	6	3	3	0	0	0	copy fasta	SCAND3	chr6	28565535	28592298
SCAND3_chr6_28565535_28592298	0/0	c0006	3978	5	5	0	0	0	0	copy fasta	SCAND3	chr6	28565535	28592298
SCAND3_chr6_28565535_28592298	0/0	c0007	3978	4	0	4	0	0	0	copy fasta	SCAND3	chr6	28565535	28592298
SCAND3_chr6_28565535_28592298	0/0	c0008	3978	3	3	0	0	0	0	copy fasta	SCAND3	chr6	28565535	28592298
SCAND3_chr6_28565535_28592298	0/0	c0009	3978	2	0	0	2	0	0	copy fasta	SCAND3	chr6	28565535	28592298
SCAND3_chr6_28565535_28592298	0/0	c0010	3978	2	0	0	0	2	0	copy fasta	SCAND3	chr6	28565535	28592298
SCAND3_chr6_28565535_28592298	0/0	c0011	3978	1	0	0	1	0	0	copy fasta	SCAND3	chr6	28565535	28592298
SCAND3_chr6_28565535_28592298	0/0	c0012	3978	1	0	0	0	0	1	copy fasta	SCAND3	chr6	28565535	28592298
SCAND3_chr6_28565535_28592298	0/0	c0013	3978	1	0	0	1	0	0	copy fasta	SCAND3	chr6	28565535	28592298
SCAND3_chr6_28565535_28592298	0/0	c0014	3978	1	0	1	0	0	0	copy fasta	SCAND3	chr6	28565535	28592298
SCAND3_chr6_28565535_28592298	0/0	c0015	3978	1	0	0	0	0	1	copy fasta	SCAND3	chr6	28565535	28592298
SCAND3_chr6_28565535_28592298	0/0	c0016	3978	1	0	0	0	0	1	copy fasta	SCAND3	chr6	28565535	28592298
SCAND3_chr6_28565535_28592298	0/0	c0017	3978	1	0	0	0	0	1	copy fasta	SCAND3	chr6	28565535	28592298
SCAPER_chr15_76342904_76910340	1/0	c0001	4203	151	45	25	61	7	12	copy fasta	SCAPER	chr15	76342904	76910340
SCAPER_chr15_76342904_76910340	0/0	c0002	4203	82	9	14	48	3	8	copy fasta	SCAPER	chr15	76342904	76910340
SCAPER_chr15_76342904_76910340	0/0	c0003	4203	26	24	1	0	0	1	copy fasta	SCAPER	chr15	76342904	76910340
SCAPER_chr15_76342904_76910340	0/0	c0004	4203	7	7	0	0	0	0	copy fasta	SCAPER	chr15	76342904	76910340
SCAPER_chr15_76342904_76910340	0/0	c0005	4203	6	0	0	5	0	1	copy fasta	SCAPER	chr15	76342904	76910340
SCAPER_chr15_76342904_76910340	0/0	c0006	4203	5	0	2	1	0	2	copy fasta	SCAPER	chr15	76342904	76910340
SCAPER_chr15_76342904_76910340	0/1	c0007	4203	5	0	3	0	1	0	copy fasta	SCAPER	chr15	76342904	76910340
SCAPER_chr15_76342904_76910340	0/0	c0008	4203	3	3	0	0	0	0	copy fasta	SCAPER	chr15	76342904	76910340
SCAPER_chr15_76342904_76910340	0/0	c0009	4203	3	3	0	0	0	0	copy fasta	SCAPER	chr15	76342904	76910340
SCAPER_chr15_76342904_76910340	0/0	c0010	4203	3	1	2	0	0	0	copy fasta	SCAPER	chr15	76342904	76910340
SCAPER_chr15_76342904_76910340	0/0	c0011	4203	3	0	0	3	0	0	copy fasta	SCAPER	chr15	76342904	76910340
SCAPER_chr15_76342904_76910340	0/0	c0012	4203	2	0	1	0	0	1	copy fasta	SCAPER	chr15	76342904	76910340
SCAPER_chr15_76342904_76910340	0/0	c0013	4203	2	2	0	0	0	0	copy fasta	SCAPER	chr15	76342904	76910340
SCAPER_chr15_76342904_76910340	0/0	c0014	4203	2	2	0	0	0	0	copy fasta	SCAPER	chr15	76342904	76910340
SCAPER_chr15_76342904_76910340	0/0	c0015	4203	2	0	1	0	0	1	copy fasta	SCAPER	chr15	76342904	76910340
SCAPER_chr15_76342904_76910340	0/0	c0016	4203	1	0	0	1	0	0	copy fasta	SCAPER	chr15	76342904	76910340
SCAPER_chr15_76342904_76910340	0/0	c0017	4203	1	0	0	1	0	0	copy fasta	SCAPER	chr15	76342904	76910340
SCAPER_chr15_76342904_76910340	0/0	c0018	4203	1	1	0	0	0	0	copy fasta	SCAPER	chr15	76342904	76910340
SCAPER_chr15_76342904_76910340	0/0	c0019	4203	1	1	0	0	0	0	copy fasta	SCAPER	chr15	76342904	76910340
SCAPER_chr15_76342904_76910340	0/0	c0020	4203	1	0	1	0	0	0	copy fasta	SCAPER	chr15	76342904	76910340
SCAPER_chr15_76342904_76910340	0/0	c0021	4203	1	0	1	0	0	0	copy fasta	SCAPER	chr15	76342904	76910340
SCAPER_chr15_76342904_76910340	0/0	c0022	4203	1	0	1	0	0	0	copy fasta	SCAPER	chr15	76342904	76910340
SCAPER_chr15_76342904_76910340	0/0	c0023	4203	1	0	0	0	1	0	copy fasta	SCAPER	chr15	76342904	76910340
SCAPER_chr15_76342904_76910340	0/0	c0024	4203	1	0	0	1	0	0	copy fasta	SCAPER	chr15	76342904	76910340
SCAPER_chr15_76342904_76910340	0/0	c0025	4203	1	0	0	1	0	0	copy fasta	SCAPER	chr15	76342904	76910340
SCAP_chr3_47408681_47480941	0/0	c0001	3840	151	45	26	57	7	16	copy fasta	SCAP	chr3	47408681	47480941
SCAP_chr3_47408681_47480941	0/1	c0002	3840	112	15	30	46	3	17	copy fasta	SCAP	chr3	47408681	47480941