JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SCAP_chr3_47408681_47480941	1/0	c0003	3840	15	14	0	0	0	0	copy fasta	SCAP	chr3	47408681	47480941
SCAP_chr3_47408681_47480941	0/0	c0004	3840	3	0	0	3	0	0	copy fasta	SCAP	chr3	47408681	47480941
SCAP_chr3_47408681_47480941	0/0	c0005	3840	3	3	0	0	0	0	copy fasta	SCAP	chr3	47408681	47480941
SCAP_chr3_47408681_47480941	0/0	c0006	3840	2	0	0	2	0	0	copy fasta	SCAP	chr3	47408681	47480941
SCAP_chr3_47408681_47480941	0/0	c0007	3840	2	0	0	2	0	0	copy fasta	SCAP	chr3	47408681	47480941
SCAP_chr3_47408681_47480941	0/0	c0008	3840	2	1	1	0	0	0	copy fasta	SCAP	chr3	47408681	47480941
SCAP_chr3_47408681_47480941	0/0	c0009	3840	1	0	0	0	0	1	copy fasta	SCAP	chr3	47408681	47480941
SCAP_chr3_47408681_47480941	0/0	c0010	3840	1	1	0	0	0	0	copy fasta	SCAP	chr3	47408681	47480941
SCAP_chr3_47408681_47480941	0/0	c0011	3840	1	0	0	0	0	1	copy fasta	SCAP	chr3	47408681	47480941
SCAP_chr3_47408681_47480941	0/0	c0012	3840	1	0	0	1	0	0	copy fasta	SCAP	chr3	47408681	47480941
SCAP_chr3_47408681_47480941	0/0	c0013	3840	1	0	1	0	0	0	copy fasta	SCAP	chr3	47408681	47480941
SCAP_chr3_47408681_47480941	0/0	c0014	3840	1	0	0	1	0	0	copy fasta	SCAP	chr3	47408681	47480941
SCAP_chr3_47408681_47480941	0/0	c0015	3840	1	0	0	1	0	0	copy fasta	SCAP	chr3	47408681	47480941
SCAP_chr3_47408681_47480941	0/0	c0016	3840	1	0	0	1	0	0	copy fasta	SCAP	chr3	47408681	47480941
SCAP_chr3_47408681_47480941	0/0	c0017	3840	1	0	0	1	0	0	copy fasta	SCAP	chr3	47408681	47480941
SCAP_chr3_47408681_47480941	0/0	c0018	3840	1	1	0	0	0	0	copy fasta	SCAP	chr3	47408681	47480941
SCAP_chr3_47408681_47480941	0/0	c0019	3840	1	1	0	0	0	0	copy fasta	SCAP	chr3	47408681	47480941
SCAP_chr3_47408681_47480941	0/0	c0020	3840	1	0	0	1	0	0	copy fasta	SCAP	chr3	47408681	47480941
SCAP_chr3_47408681_47480941	0/0	c0021	3840	1	0	0	0	0	1	copy fasta	SCAP	chr3	47408681	47480941
SCAP_chr3_47408681_47480941	0/0	c0022	3840	1	1	0	0	0	0	copy fasta	SCAP	chr3	47408681	47480941
SCARA3_chr8_27628902_27678018	1/1	c0001	1821	319	81	66	122	11	37	copy fasta	SCARA3	chr8	27628902	27678018
SCARA3_chr8_27628902_27678018	0/0	c0002	1821	47	3	1	37	1	5	copy fasta	SCARA3	chr8	27628902	27678018
SCARA3_chr8_27628902_27678018	0/0	c0003	1821	27	0	1	25	0	1	copy fasta	SCARA3	chr8	27628902	27678018
SCARA3_chr8_27628902_27678018	0/0	c0004	1821	2	0	0	2	0	0	copy fasta	SCARA3	chr8	27628902	27678018
SCARA3_chr8_27628902_27678018	0/0	c0005	1821	2	0	2	0	0	0	copy fasta	SCARA3	chr8	27628902	27678018
SCARA3_chr8_27628902_27678018	0/0	c0006	1821	2	0	0	2	0	0	copy fasta	SCARA3	chr8	27628902	27678018
SCARA3_chr8_27628902_27678018	0/0	c0007	1821	2	2	0	0	0	0	copy fasta	SCARA3	chr8	27628902	27678018
SCARA3_chr8_27628902_27678018	0/0	c0008	1821	1	1	0	0	0	0	copy fasta	SCARA3	chr8	27628902	27678018
SCARA3_chr8_27628902_27678018	0/0	c0009	1821	1	1	0	0	0	0	copy fasta	SCARA3	chr8	27628902	27678018
SCARA3_chr8_27628902_27678018	0/0	c0010	1821	1	1	0	0	0	0	copy fasta	SCARA3	chr8	27628902	27678018
SCARA3_chr8_27628902_27678018	0/0	c0011	1821	1	1	0	0	0	0	copy fasta	SCARA3	chr8	27628902	27678018
SCARA3_chr8_27628902_27678018	0/0	c0012	1821	1	0	0	0	0	1	copy fasta	SCARA3	chr8	27628902	27678018
SCARA3_chr8_27628902_27678018	0/0	c0013	1821	1	0	0	1	0	0	copy fasta	SCARA3	chr8	27628902	27678018
SCARA3_chr8_27628902_27678018	0/0	c0014	1821	1	0	0	1	0	0	copy fasta	SCARA3	chr8	27628902	27678018
SCARA5_chr8_27864883_27997673	0/0	c0001	1488	65	14	6	34	3	8	copy fasta	SCARA5	chr8	27864883	27997673
SCARA5_chr8_27864883_27997673	0/0	c0002	1488	54	8	20	15	2	9	copy fasta	SCARA5	chr8	27864883	27997673
SCARA5_chr8_27864883_27997673	0/0	c0003	1488	26	18	4	0	1	3	copy fasta	SCARA5	chr8	27864883	27997673
SCARA5_chr8_27864883_27997673	0/0	c0004	1488	21	3	3	8	2	5	copy fasta	SCARA5	chr8	27864883	27997673
SCARA5_chr8_27864883_27997673	1/0	c0005	1488	20	4	1	10	2	2	copy fasta	SCARA5	chr8	27864883	27997673
SCARA5_chr8_27864883_27997673	0/0	c0006	1488	16	0	1	11	2	2	copy fasta	SCARA5	chr8	27864883	27997673
SCARA5_chr8_27864883_27997673	0/1	c0007	1488	15	10	3	0	0	1	copy fasta	SCARA5	chr8	27864883	27997673
SCARA5_chr8_27864883_27997673	0/0	c0008	1488	15	1	5	5	0	4	copy fasta	SCARA5	chr8	27864883	27997673
SCARA5_chr8_27864883_27997673	0/0	c0009	1488	15	5	1	7	1	1	copy fasta	SCARA5	chr8	27864883	27997673
SCARA5_chr8_27864883_27997673	0/0	c0010	1488	14	1	3	10	0	0	copy fasta	SCARA5	chr8	27864883	27997673
SCARA5_chr8_27864883_27997673	0/0	c0011	1488	7	7	0	0	0	0	copy fasta	SCARA5	chr8	27864883	27997673
SCARA5_chr8_27864883_27997673	0/0	c0012	1488	6	0	5	1	0	0	copy fasta	SCARA5	chr8	27864883	27997673
SCARA5_chr8_27864883_27997673	0/0	c0013	1488	5	1	0	4	0	0	copy fasta	SCARA5	chr8	27864883	27997673
SCARA5_chr8_27864883_27997673	0/0	c0014	1488	4	3	1	0	0	0	copy fasta	SCARA5	chr8	27864883	27997673
SCARA5_chr8_27864883_27997673	0/0	c0015	1488	4	1	0	2	0	1	copy fasta	SCARA5	chr8	27864883	27997673
SCARA5_chr8_27864883_27997673	0/0	c0016	1488	3	0	0	3	0	0	copy fasta	SCARA5	chr8	27864883	27997673