JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SCARA5_chr8_27864883_27997673	0/0	c0017	1488	3	2	0	1	0	0	copy fasta	SCARA5	chr8	27864883	27997673
SCARA5_chr8_27864883_27997673	0/0	c0018	1488	3	2	0	0	1	0	copy fasta	SCARA5	chr8	27864883	27997673
SCARA5_chr8_27864883_27997673	0/0	c0019	1488	3	3	0	0	0	0	copy fasta	SCARA5	chr8	27864883	27997673
SCARA5_chr8_27864883_27997673	0/0	c0020	1488	1	0	0	1	0	0	copy fasta	SCARA5	chr8	27864883	27997673
SCARA5_chr8_27864883_27997673	0/0	c0021	1488	1	1	0	0	0	0	copy fasta	SCARA5	chr8	27864883	27997673
SCARA5_chr8_27864883_27997673	0/0	c0022	1488	1	1	0	0	0	0	copy fasta	SCARA5	chr8	27864883	27997673
SCARA5_chr8_27864883_27997673	0/0	c0023	1488	1	1	0	0	0	0	copy fasta	SCARA5	chr8	27864883	27997673
SCARA5_chr8_27864883_27997673	0/0	c0024	1488	1	0	0	1	0	0	copy fasta	SCARA5	chr8	27864883	27997673
SCARA5_chr8_27864883_27997673	0/0	c0025	1488	1	0	1	0	0	0	copy fasta	SCARA5	chr8	27864883	27997673
SCARA5_chr8_27864883_27997673	0/0	c0026	1488	1	0	0	1	0	0	copy fasta	SCARA5	chr8	27864883	27997673
SCARA5_chr8_27864883_27997673	0/0	c0027	1488	1	0	0	1	0	0	copy fasta	SCARA5	chr8	27864883	27997673
SCARA5_chr8_27864883_27997673	0/0	c0028	1488	1	0	0	1	0	0	copy fasta	SCARA5	chr8	27864883	27997673
SCARA5_chr8_27864883_27997673	0/0	c0029	1488	1	1	0	0	0	0	copy fasta	SCARA5	chr8	27864883	27997673
SCARA5_chr8_27864883_27997673	0/0	c0030	1488	1	1	0	0	0	0	copy fasta	SCARA5	chr8	27864883	27997673
SCARA5_chr8_27864883_27997673	0/0	c0031	1488	1	0	0	1	0	0	copy fasta	SCARA5	chr8	27864883	27997673
SCARA5_chr8_27864883_27997673	0/0	c0032	1488	1	0	0	1	0	0	copy fasta	SCARA5	chr8	27864883	27997673
SCARA5_chr8_27864883_27997673	0/0	c0033	1488	1	0	0	1	0	0	copy fasta	SCARA5	chr8	27864883	27997673
SCARA5_chr8_27864883_27997673	0/0	c0034	1488	1	0	0	1	0	0	copy fasta	SCARA5	chr8	27864883	27997673
SCARB1_chr12_124771856_124868864	0/1	c0001	1530	153	59	33	44	4	12	copy fasta	SCARB1	chr12	124771856	124868864
SCARB1_chr12_124771856_124868864	1/0	c0002	1530	76	4	17	30	2	22	copy fasta	SCARB1	chr12	124771856	124868864
SCARB1_chr12_124771856_124868864	0/0	c0003	1530	57	0	5	51	0	1	copy fasta	SCARB1	chr12	124771856	124868864
SCARB1_chr12_124771856_124868864	0/0	c0004	1530	17	4	0	9	0	4	copy fasta	SCARB1	chr12	124771856	124868864
SCARB1_chr12_124771856_124868864	0/0	c0005	1530	12	12	0	0	0	0	copy fasta	SCARB1	chr12	124771856	124868864
SCARB1_chr12_124771856_124868864	0/0	c0006	1530	11	3	6	0	2	0	copy fasta	SCARB1	chr12	124771856	124868864
SCARB1_chr12_124771856_124868864	0/0	c0007	1530	8	0	0	6	0	2	copy fasta	SCARB1	chr12	124771856	124868864
SCARB1_chr12_124771856_124868864	0/0	c0008	1530	6	0	3	0	2	1	copy fasta	SCARB1	chr12	124771856	124868864
SCARB1_chr12_124771856_124868864	0/0	c0009	1530	2	1	0	0	0	1	copy fasta	SCARB1	chr12	124771856	124868864
SCARB1_chr12_124771856_124868864	0/0	c0010	1530	2	0	0	0	0	2	copy fasta	SCARB1	chr12	124771856	124868864
SCARB1_chr12_124771856_124868864	0/0	c0011	1530	2	0	0	2	0	0	copy fasta	SCARB1	chr12	124771856	124868864
SCARB1_chr12_124771856_124868864	0/0	c0012	1530	2	0	0	0	0	2	copy fasta	SCARB1	chr12	124771856	124868864
SCARB1_chr12_124771856_124868864	0/0	c0013	1530	1	1	0	0	0	0	copy fasta	SCARB1	chr12	124771856	124868864
SCARB1_chr12_124771856_124868864	0/0	c0014	1530	1	1	0	0	0	0	copy fasta	SCARB1	chr12	124771856	124868864
SCARB1_chr12_124771856_124868864	0/0	c0015	1530	1	0	0	0	0	1	copy fasta	SCARB1	chr12	124771856	124868864
SCARB1_chr12_124771856_124868864	0/0	c0016	1530	1	1	0	0	0	0	copy fasta	SCARB1	chr12	124771856	124868864
SCARB1_chr12_124771856_124868864	0/0	c0017	1530	1	1	0	0	0	0	copy fasta	SCARB1	chr12	124771856	124868864
SCARB1_chr12_124771856_124868864	0/0	c0018	1530	1	1	0	0	0	0	copy fasta	SCARB1	chr12	124771856	124868864
SCARB1_chr12_124771856_124868864	0/0	c0019	1530	1	1	0	0	0	0	copy fasta	SCARB1	chr12	124771856	124868864
SCARB1_chr12_124771856_124868864	0/0	c0020	1530	1	1	0	0	0	0	copy fasta	SCARB1	chr12	124771856	124868864
SCARB2_chr4_76153737_76218824	1/1	c0001	1437	346	66	62	163	15	38	copy fasta	SCARB2	chr4	76153737	76218824
SCARB2_chr4_76153737_76218824	0/0	c0002	1437	16	16	0	0	0	0	copy fasta	SCARB2	chr4	76153737	76218824
SCARB2_chr4_76153737_76218824	0/0	c0003	1437	7	7	0	0	0	0	copy fasta	SCARB2	chr4	76153737	76218824
SCARB2_chr4_76153737_76218824	0/0	c0004	1437	3	0	0	3	0	0	copy fasta	SCARB2	chr4	76153737	76218824
SCARB2_chr4_76153737_76218824	0/0	c0005	1437	3	0	0	3	0	0	copy fasta	SCARB2	chr4	76153737	76218824
SCARB2_chr4_76153737_76218824	0/0	c0006	1437	2	2	0	0	0	0	copy fasta	SCARB2	chr4	76153737	76218824
SCARB2_chr4_76153737_76218824	0/0	c0007	1437	2	0	0	2	0	0	copy fasta	SCARB2	chr4	76153737	76218824
SCARB2_chr4_76153737_76218824	0/0	c0008	1437	1	1	0	0	0	0	copy fasta	SCARB2	chr4	76153737	76218824
SCARB2_chr4_76153737_76218824	0/0	c0009	1437	1	1	0	0	0	0	copy fasta	SCARB2	chr4	76153737	76218824
SCARB2_chr4_76153737_76218824	0/0	c0010	1437	1	1	0	0	0	0	copy fasta	SCARB2	chr4	76153737	76218824
SCARB2_chr4_76153737_76218824	0/0	c0011	1055	1	0	0	1	0	0	copy fasta	SCARB2	chr4	76153737	76218824
SCARB2_chr4_76153737_76218824	0/0	c0012	1437	1	0	0	0	1	0	copy fasta	SCARB2	chr4	76153737	76218824