JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SCARF1_chr17_1628858_1650732	0/1	c0001	2493	232	22	35	144	6	24	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	c0002	2493	29	2	6	9	3	9	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	c0003	2493	27	10	1	16	0	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	c0004	2493	20	1	17	0	2	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	c0005	2493	14	14	0	0	0	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	c0006	2493	9	1	5	0	3	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	c0007	2493	7	7	0	0	0	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	c0008	2493	6	6	0	0	0	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	c0009	2493	5	5	0	0	0	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	c0010	2493	5	4	1	0	0	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	c0011	2493	4	4	0	0	0	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	c0012	2493	4	4	0	0	0	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	c0013	2496	4	0	0	0	0	4	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	c0014	2496	3	1	0	0	0	2	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	c0015	2493	2	0	2	0	0	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	c0016	2493	2	2	0	0	0	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	c0017	2493	2	0	0	0	0	2	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	c0018	2493	2	2	0	0	0	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	c0019	2493	1	0	0	0	0	1	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	c0020	2493	1	0	0	1	0	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	c0021	2493	1	1	0	0	0	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	c0022	2493	1	0	1	0	0	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	c0023	2493	1	1	0	0	0	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	c0024	2493	1	0	0	1	0	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	c0025	2493	1	1	0	0	0	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	c0026	2493	1	0	0	1	0	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	c0027	2493	1	0	0	0	0	1	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	c0028	2493	1	1	0	0	0	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	c0029	2493	1	1	0	0	0	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	c0030	2493	1	0	0	0	0	1	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	c0031	2493	1	0	0	0	0	1	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	c0032	2493	1	0	0	0	0	1	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	c0033	2493	1	1	0	0	0	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	c0034	2493	1	0	0	1	0	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	c0035	2493	1	1	0	0	0	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	c0036	2493	1	1	0	0	0	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	c0037	2493	1	0	0	1	0	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	c0038	2496	1	1	0	0	0	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	c0039	2496	1	1	0	0	0	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	c0040	2496	1	1	0	0	0	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	c0041	2496	1	1	0	0	0	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	c0042	2496	1	1	0	0	0	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF2_chr22_20419584_20442825	0/1	c0001	2601	101	15	16	62	3	4	copy fasta	SCARF2	chr22	20419584	20442825
SCARF2_chr22_20419584_20442825	0/0	c0002	2601	99	19	16	38	4	22	copy fasta	SCARF2	chr22	20419584	20442825
SCARF2_chr22_20419584_20442825	0/0	c0003	2601	77	30	23	14	5	5	copy fasta	SCARF2	chr22	20419584	20442825
SCARF2_chr22_20419584_20442825	0/0	c0004	2601	59	1	6	35	5	12	copy fasta	SCARF2	chr22	20419584	20442825
SCARF2_chr22_20419584_20442825	1/0	c0005	2601	30	9	8	10	0	2	copy fasta	SCARF2	chr22	20419584	20442825
SCARF2_chr22_20419584_20442825	0/0	c0006	2601	12	12	0	0	0	0	copy fasta	SCARF2	chr22	20419584	20442825
SCARF2_chr22_20419584_20442825	0/0	c0007	2601	4	0	0	3	1	0	copy fasta	SCARF2	chr22	20419584	20442825
SCARF2_chr22_20419584_20442825	0/0	c0008	2601	4	2	0	0	0	2	copy fasta	SCARF2	chr22	20419584	20442825