JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SCARF2_chr22_20419584_20442825	0/0	c0009	2601	3	0	3	0	0	0	copy fasta	SCARF2	chr22	20419584	20442825
SCARF2_chr22_20419584_20442825	0/0	c0010	2601	2	0	2	0	0	0	copy fasta	SCARF2	chr22	20419584	20442825
SCARF2_chr22_20419584_20442825	0/0	c0011	2601	1	0	0	1	0	0	copy fasta	SCARF2	chr22	20419584	20442825
SCARF2_chr22_20419584_20442825	0/0	c0012	2601	1	0	0	1	0	0	copy fasta	SCARF2	chr22	20419584	20442825
SCARF2_chr22_20419584_20442825	0/0	c0013	2601	1	1	0	0	0	0	copy fasta	SCARF2	chr22	20419584	20442825
SCARF2_chr22_20419584_20442825	0/0	c0014	2601	1	0	0	0	0	1	copy fasta	SCARF2	chr22	20419584	20442825
SCARF2_chr22_20419584_20442825	0/0	c0015	2601	1	0	0	1	0	0	copy fasta	SCARF2	chr22	20419584	20442825
SCARF2_chr22_20419584_20442825	0/0	c0016	2601	1	1	0	0	0	0	copy fasta	SCARF2	chr22	20419584	20442825
SCARF2_chr22_20419584_20442825	0/0	c0017	2601	1	1	0	0	0	0	copy fasta	SCARF2	chr22	20419584	20442825
SCARF2_chr22_20419584_20442825	0/0	c0018	2601	1	0	0	1	0	0	copy fasta	SCARF2	chr22	20419584	20442825
SCARF2_chr22_20419584_20442825	0/0	c0019	2583	1	0	0	1	0	0	copy fasta	SCARF2	chr22	20419584	20442825
SCARF2_chr22_20419584_20442825	0/0	c0020	2601	1	1	0	0	0	0	copy fasta	SCARF2	chr22	20419584	20442825
SCARF2_chr22_20419584_20442825	0/0	c0021	2601	1	0	0	1	0	0	copy fasta	SCARF2	chr22	20419584	20442825
SCART1_chr10_133448945_133474760	0/1	c0001	3084	162	21	36	69	9	26	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	c0002	3084	73	11	12	47	1	2	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	c0003	3076	28	0	4	23	0	1	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	1/0	c0004	3084	16	4	1	6	0	4	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	c0005	3076	10	10	0	0	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	c0006	3084	10	0	0	10	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	c0007	3076	7	0	0	7	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	c0008	3076	7	0	0	7	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	c0009	3076	6	6	0	0	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	c0010	3076	6	1	0	4	0	1	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	c0011	3084	6	1	1	1	3	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	c0012	3084	5	0	5	0	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	c0013	3084	5	0	2	0	0	3	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	c0014	3084	5	0	0	5	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	c0015	3083	5	1	0	0	0	4	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	c0016	3077	4	3	1	0	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	c0017	3070	4	4	0	0	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	c0018	3084	4	3	1	0	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	c0019	3076	4	3	1	0	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	c0020	3076	4	4	0	0	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	c0021	3076	4	1	1	0	0	2	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	c0022	3084	4	4	0	0	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	c0023	3084	4	0	4	0	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	c0024	3076	3	0	0	1	0	2	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	c0025	3077	3	3	0	0	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	c0026	3084	2	0	0	2	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	c0027	3076	2	2	0	0	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	c0028	3084	2	2	0	0	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	c0029	3084	2	2	0	0	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	c0030	3084	2	0	1	0	0	1	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	c0031	3077	1	0	1	0	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	c0032	3077	1	1	0	0	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	c0033	3077	1	0	0	1	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	c0034	3084	1	0	1	0	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	c0035	3084	1	1	0	0	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	c0036	3084	1	0	0	1	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	c0037	3084	1	1	0	0	0	0	copy fasta	SCART1	chr10	133448945	133474760