JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SCART1_chr10_133448945_133474760	0/0	c0038	3076	1	0	1	0	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	c0039	3076	1	0	0	0	1	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	c0040	3083	1	1	0	0	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	c0041	3077	1	1	0	0	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	c0042	3084	1	1	0	0	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	c0043	3076	1	0	1	0	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	c0044	3084	1	1	0	0	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	c0045	3077	1	1	0	0	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	c0046	3084	1	0	1	0	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	c0047	3077	1	1	0	0	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	c0048	3084	1	0	0	1	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	c0049	3084	1	1	0	0	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	c0050	3077	1	1	0	0	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	c0051	3084	1	0	0	1	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	c0052	3084	1	0	1	0	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	c0053	3084	1	0	0	1	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	c0054	3084	1	0	1	0	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	c0055	3084	1	1	0	0	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	c0056	3084	1	0	0	0	0	1	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	c0057	3076	1	0	1	0	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	c0058	3076	1	0	0	1	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	c0059	3084	1	0	0	0	0	1	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	c0060	3077	1	0	0	1	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	c0061	3084	1	0	0	1	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	c0062	3084	1	0	1	0	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	c0063	3084	1	0	1	0	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	c0064	3084	1	0	0	1	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	c0065	3076	1	0	0	1	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCCPDH_chr1_246719409_246773137	1/0	c0001	1290	352	83	64	151	15	38	copy fasta	SCCPDH	chr1	246719409	246773137
SCCPDH_chr1_246719409_246773137	0/0	c0002	1290	48	8	4	34	0	2	copy fasta	SCCPDH	chr1	246719409	246773137
SCCPDH_chr1_246719409_246773137	0/1	c0003	1290	4	0	2	0	1	0	copy fasta	SCCPDH	chr1	246719409	246773137
SCCPDH_chr1_246719409_246773137	0/0	c0004	1290	3	0	0	3	0	0	copy fasta	SCCPDH	chr1	246719409	246773137
SCCPDH_chr1_246719409_246773137	0/0	c0005	1290	1	1	0	0	0	0	copy fasta	SCCPDH	chr1	246719409	246773137
SCCPDH_chr1_246719409_246773137	0/0	c0006	1290	1	1	0	0	0	0	copy fasta	SCCPDH	chr1	246719409	246773137
SCCPDH_chr1_246719409_246773137	0/0	c0007	1290	1	1	0	0	0	0	copy fasta	SCCPDH	chr1	246719409	246773137
SCD5_chr4_82624539_82803796	1/1	c0001	993	202	72	31	65	6	26	copy fasta	SCD5	chr4	82624539	82803796
SCD5_chr4_82624539_82803796	0/0	c0002	993	4	3	1	0	0	0	copy fasta	SCD5	chr4	82624539	82803796
SCD5_chr4_82624539_82803796	0/0	c0003	993	2	2	0	0	0	0	copy fasta	SCD5	chr4	82624539	82803796
SCD5_chr4_82624539_82803796	0/0	c0004	993	1	1	0	0	0	0	copy fasta	SCD5	chr4	82624539	82803796
SCD5_chr4_82624539_82803796	0/0	c0005	993	1	0	0	1	0	0	copy fasta	SCD5	chr4	82624539	82803796
SCD_chr10_100342233_100369826	1/1	c0001	1080	246	43	37	115	9	40	copy fasta	SCD	chr10	100342233	100369826
SCD_chr10_100342233_100369826	0/0	c0002	1080	155	32	29	80	5	9	copy fasta	SCD	chr10	100342233	100369826
SCD_chr10_100342233_100369826	0/0	c0003	1080	15	15	0	0	0	0	copy fasta	SCD	chr10	100342233	100369826
SCD_chr10_100342233_100369826	0/0	c0004	1080	2	2	0	0	0	0	copy fasta	SCD	chr10	100342233	100369826
SCD_chr10_100342233_100369826	0/0	c0005	1080	1	0	0	1	0	0	copy fasta	SCD	chr10	100342233	100369826
SCD_chr10_100342233_100369826	0/0	c0006	1080	1	0	0	0	0	1	copy fasta	SCD	chr10	100342233	100369826
SCEL_chr13_77530706_77650263	0/0	c0001	2067	94	8	12	68	1	5	copy fasta	SCEL	chr13	77530706	77650263
SCEL_chr13_77530706_77650263	0/1	c0002	2067	94	16	26	31	6	14	copy fasta	SCEL	chr13	77530706	77650263
SCEL_chr13_77530706_77650263	0/0	c0003	2067	67	10	11	39	1	6	copy fasta	SCEL	chr13	77530706	77650263
SCEL_chr13_77530706_77650263	0/0	c0004	2067	60	24	10	22	3	1	copy fasta	SCEL	chr13	77530706	77650263