JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ATG9B_chr7_151010151_151029494	0/0	c0031	2775	1	1	0	0	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	c0032	2775	1	0	0	1	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	c0033	2775	1	0	0	1	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	c0034	2775	1	0	0	0	0	1	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	c0035	2793	1	0	0	1	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	c0036	2775	1	0	0	1	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	c0037	2775	1	0	0	0	0	1	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	c0038	2775	1	1	0	0	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	c0039	2775	1	0	0	1	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	c0040	2775	1	0	0	1	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	c0041	2775	1	0	0	1	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	c0042	2775	1	0	0	0	0	1	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	c0043	2775	1	1	0	0	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	c0044	2775	1	0	0	1	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	c0045	2775	1	0	0	1	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	c0046	2775	1	1	0	0	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	c0047	2775	1	0	0	1	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATIC_chr2_215307059_215354764	1/1	c0001	1779	278	73	49	121	5	28	copy fasta	ATIC	chr2	215307059	215354764
ATIC_chr2_215307059_215354764	0/0	c0002	1779	74	2	14	36	4	18	copy fasta	ATIC	chr2	215307059	215354764
ATIC_chr2_215307059_215354764	0/0	c0003	1779	7	7	0	0	0	0	copy fasta	ATIC	chr2	215307059	215354764
ATIC_chr2_215307059_215354764	0/0	c0004	1779	5	4	1	0	0	0	copy fasta	ATIC	chr2	215307059	215354764
ATIC_chr2_215307059_215354764	0/0	c0005	1779	3	3	0	0	0	0	copy fasta	ATIC	chr2	215307059	215354764
ATIC_chr2_215307059_215354764	0/0	c0006	1779	2	2	0	0	0	0	copy fasta	ATIC	chr2	215307059	215354764
ATIC_chr2_215307059_215354764	0/0	c0007	1779	2	2	0	0	0	0	copy fasta	ATIC	chr2	215307059	215354764
ATIC_chr2_215307059_215354764	0/0	c0008	1779	1	1	0	0	0	0	copy fasta	ATIC	chr2	215307059	215354764
ATIC_chr2_215307059_215354764	0/0	c0009	1779	1	1	0	0	0	0	copy fasta	ATIC	chr2	215307059	215354764
ATIC_chr2_215307059_215354764	0/0	c0010	1779	1	0	1	0	0	0	copy fasta	ATIC	chr2	215307059	215354764
ATIC_chr2_215307059_215354764	0/0	c0011	1779	1	0	0	0	1	0	copy fasta	ATIC	chr2	215307059	215354764
ATIC_chr2_215307059_215354764	0/0	c0012	1779	1	1	0	0	0	0	copy fasta	ATIC	chr2	215307059	215354764
ATIC_chr2_215307059_215354764	0/0	c0013	1779	1	0	0	1	0	0	copy fasta	ATIC	chr2	215307059	215354764
ATIC_chr2_215307059_215354764	0/0	c0014	1779	1	0	1	0	0	0	copy fasta	ATIC	chr2	215307059	215354764
ATIC_chr2_215307059_215354764	0/0	c0015	1779	1	0	0	1	0	0	copy fasta	ATIC	chr2	215307059	215354764
ATIC_chr2_215307059_215354764	0/0	c0016	1779	1	0	0	1	0	0	copy fasta	ATIC	chr2	215307059	215354764
ATIC_chr2_215307059_215354764	0/0	c0017	1779	1	1	0	0	0	0	copy fasta	ATIC	chr2	215307059	215354764
ATIC_chr2_215307059_215354764	0/0	c0018	1779	1	1	0	0	0	0	copy fasta	ATIC	chr2	215307059	215354764
ATL1_chr14_50555145_50638045	0/0	c0001	1677	174	47	36	71	5	15	copy fasta	ATL1	chr14	50555145	50638045
ATL1_chr14_50555145_50638045	1/0	c0002	1677	65	3	15	36	2	8	copy fasta	ATL1	chr14	50555145	50638045
ATL1_chr14_50555145_50638045	0/1	c0003	1677	58	25	15	14	1	2	copy fasta	ATL1	chr14	50555145	50638045
ATL1_chr14_50555145_50638045	0/0	c0004	1677	10	10	0	0	0	0	copy fasta	ATL1	chr14	50555145	50638045
ATL1_chr14_50555145_50638045	0/0	c0005	1677	3	0	0	3	0	0	copy fasta	ATL1	chr14	50555145	50638045
ATL1_chr14_50555145_50638045	0/0	c0006	1677	2	2	0	0	0	0	copy fasta	ATL1	chr14	50555145	50638045
ATL1_chr14_50555145_50638045	0/0	c0007	1677	2	2	0	0	0	0	copy fasta	ATL1	chr14	50555145	50638045
ATL1_chr14_50555145_50638045	0/0	c0008	1677	1	1	0	0	0	0	copy fasta	ATL1	chr14	50555145	50638045
ATL1_chr14_50555145_50638045	0/0	c0009	1677	1	1	0	0	0	0	copy fasta	ATL1	chr14	50555145	50638045
ATL1_chr14_50555145_50638045	0/0	c0010	1677	1	0	0	0	0	1	copy fasta	ATL1	chr14	50555145	50638045
ATL1_chr14_50555145_50638045	0/0	c0011	1677	1	0	0	1	0	0	copy fasta	ATL1	chr14	50555145	50638045
ATL1_chr14_50555145_50638045	0/0	c0012	1677	1	1	0	0	0	0	copy fasta	ATL1	chr14	50555145	50638045
ATL1_chr14_50555145_50638045	0/0	c0013	1677	1	0	0	1	0	0	copy fasta	ATL1	chr14	50555145	50638045
ATL2_chr2_38288954_38382273	0/0	c0001	1752	90	24	17	33	3	13	copy fasta	ATL2	chr2	38288954	38382273
ATL2_chr2_38288954_38382273	1/0	c0002	1752	77	12	14	34	7	9	copy fasta	ATL2	chr2	38288954	38382273