JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SCEL_chr13_77530706_77650263	0/0	c0005	2067	14	11	3	0	0	0	copy fasta	SCEL	chr13	77530706	77650263
SCEL_chr13_77530706_77650263	0/0	c0006	2067	7	7	0	0	0	0	copy fasta	SCEL	chr13	77530706	77650263
SCEL_chr13_77530706_77650263	1/0	c0007	2067	3	2	0	0	0	0	copy fasta	SCEL	chr13	77530706	77650263
SCEL_chr13_77530706_77650263	0/0	c0008	2067	2	0	0	1	0	1	copy fasta	SCEL	chr13	77530706	77650263
SCEL_chr13_77530706_77650263	0/0	c0009	2067	2	0	2	0	0	0	copy fasta	SCEL	chr13	77530706	77650263
SCEL_chr13_77530706_77650263	0/0	c0010	2067	1	0	0	0	0	1	copy fasta	SCEL	chr13	77530706	77650263
SCEL_chr13_77530706_77650263	0/0	c0011	2067	1	1	0	0	0	0	copy fasta	SCEL	chr13	77530706	77650263
SCEL_chr13_77530706_77650263	0/0	c0012	2067	1	1	0	0	0	0	copy fasta	SCEL	chr13	77530706	77650263
SCEL_chr13_77530706_77650263	0/0	c0013	2022	1	1	0	0	0	0	copy fasta	SCEL	chr13	77530706	77650263
SCEL_chr13_77530706_77650263	0/0	c0014	2067	1	0	0	1	0	0	copy fasta	SCEL	chr13	77530706	77650263
SCEL_chr13_77530706_77650263	0/0	c0015	2067	1	1	0	0	0	0	copy fasta	SCEL	chr13	77530706	77650263
SCEL_chr13_77530706_77650263	0/0	c0016	2067	1	0	0	1	0	0	copy fasta	SCEL	chr13	77530706	77650263
SCEL_chr13_77530706_77650263	0/0	c0017	2067	1	0	0	1	0	0	copy fasta	SCEL	chr13	77530706	77650263
SCEL_chr13_77530706_77650263	0/0	c0018	2067	1	0	0	0	1	0	copy fasta	SCEL	chr13	77530706	77650263
SCEL_chr13_77530706_77650263	0/0	c0019	2067	1	0	0	1	0	0	copy fasta	SCEL	chr13	77530706	77650263
SCEL_chr13_77530706_77650263	0/0	c0020	2067	1	0	0	1	0	0	copy fasta	SCEL	chr13	77530706	77650263
SCEL_chr13_77530706_77650263	0/0	c0021	2067	1	0	0	1	0	0	copy fasta	SCEL	chr13	77530706	77650263
SCEL_chr13_77530706_77650263	0/0	c0022	2067	1	0	0	1	0	0	copy fasta	SCEL	chr13	77530706	77650263
SCFD1_chr14_30617319_30740850	0/0	c0001	1929	193	60	27	89	3	14	copy fasta	SCFD1	chr14	30617319	30740850
SCFD1_chr14_30617319_30740850	1/1	c0002	1929	115	20	29	45	5	14	copy fasta	SCFD1	chr14	30617319	30740850
SCFD1_chr14_30617319_30740850	0/0	c0003	1929	5	0	0	5	0	0	copy fasta	SCFD1	chr14	30617319	30740850
SCFD1_chr14_30617319_30740850	0/0	c0004	1932	3	3	0	0	0	0	copy fasta	SCFD1	chr14	30617319	30740850
SCFD1_chr14_30617319_30740850	0/0	c0005	1932	2	2	0	0	0	0	copy fasta	SCFD1	chr14	30617319	30740850
SCFD1_chr14_30617319_30740850	0/0	c0006	1929	2	0	0	0	0	2	copy fasta	SCFD1	chr14	30617319	30740850
SCFD1_chr14_30617319_30740850	0/0	c0007	1929	1	0	0	1	0	0	copy fasta	SCFD1	chr14	30617319	30740850
SCFD1_chr14_30617319_30740850	0/0	c0008	1929	1	1	0	0	0	0	copy fasta	SCFD1	chr14	30617319	30740850
SCFD1_chr14_30617319_30740850	0/0	c0009	1929	1	0	0	1	0	0	copy fasta	SCFD1	chr14	30617319	30740850
SCFD1_chr14_30617319_30740850	0/0	c0010	1929	1	0	0	1	0	0	copy fasta	SCFD1	chr14	30617319	30740850
SCFD1_chr14_30617319_30740850	0/0	c0011	1929	1	1	0	0	0	0	copy fasta	SCFD1	chr14	30617319	30740850
SCFD1_chr14_30617319_30740850	0/0	c0012	1929	1	1	0	0	0	0	copy fasta	SCFD1	chr14	30617319	30740850
SCFD1_chr14_30617319_30740850	0/0	c0013	1929	1	0	0	1	0	0	copy fasta	SCFD1	chr14	30617319	30740850
SCFD1_chr14_30617319_30740850	0/0	c0014	1929	1	0	0	1	0	0	copy fasta	SCFD1	chr14	30617319	30740850
SCFD2_chr4_52867982_53371061	0/0	c0001	2055	82	40	12	19	1	10	copy fasta	SCFD2	chr4	52867982	53371061
SCFD2_chr4_52867982_53371061	0/0	c0002	2055	17	5	3	4	2	3	copy fasta	SCFD2	chr4	52867982	53371061
SCFD2_chr4_52867982_53371061	0/0	c0003	2055	16	7	3	6	0	0	copy fasta	SCFD2	chr4	52867982	53371061
SCFD2_chr4_52867982_53371061	0/0	c0004	2055	10	1	1	5	0	3	copy fasta	SCFD2	chr4	52867982	53371061
SCFD2_chr4_52867982_53371061	0/0	c0005	2055	10	0	4	4	2	0	copy fasta	SCFD2	chr4	52867982	53371061
SCFD2_chr4_52867982_53371061	0/0	c0006	2055	7	2	3	1	1	0	copy fasta	SCFD2	chr4	52867982	53371061
SCFD2_chr4_52867982_53371061	0/0	c0007	2055	6	0	2	3	0	1	copy fasta	SCFD2	chr4	52867982	53371061
SCFD2_chr4_52867982_53371061	0/0	c0008	2055	4	4	0	0	0	0	copy fasta	SCFD2	chr4	52867982	53371061
SCFD2_chr4_52867982_53371061	0/0	c0009	2055	3	0	0	3	0	0	copy fasta	SCFD2	chr4	52867982	53371061
SCFD2_chr4_52867982_53371061	0/0	c0010	2055	2	2	0	0	0	0	copy fasta	SCFD2	chr4	52867982	53371061
SCFD2_chr4_52867982_53371061	0/0	c0011	2055	1	0	0	1	0	0	copy fasta	SCFD2	chr4	52867982	53371061
SCFD2_chr4_52867982_53371061	0/0	c0012	2055	1	0	0	1	0	0	copy fasta	SCFD2	chr4	52867982	53371061
SCFD2_chr4_52867982_53371061	0/0	c0013	2055	1	0	0	1	0	0	copy fasta	SCFD2	chr4	52867982	53371061
SCFD2_chr4_52867982_53371061	0/0	c0014	2055	1	0	0	0	0	1	copy fasta	SCFD2	chr4	52867982	53371061
SCFD2_chr4_52867982_53371061	0/0	c0015	2055	1	1	0	0	0	0	copy fasta	SCFD2	chr4	52867982	53371061
SCG2_chr2_223591940_223607361	1/1	c0001	1854	350	60	66	171	12	39	copy fasta	SCG2	chr2	223591940	223607361
SCG2_chr2_223591940_223607361	0/0	c0002	1854	12	11	1	0	0	0	copy fasta	SCG2	chr2	223591940	223607361
SCG2_chr2_223591940_223607361	0/0	c0003	1854	9	9	0	0	0	0	copy fasta	SCG2	chr2	223591940	223607361