JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SCG2_chr2_223591940_223607361	0/0	c0004	1854	6	6	0	0	0	0	copy fasta	SCG2	chr2	223591940	223607361
SCG2_chr2_223591940_223607361	0/0	c0005	1854	5	0	0	5	0	0	copy fasta	SCG2	chr2	223591940	223607361
SCG2_chr2_223591940_223607361	0/0	c0006	1854	5	0	4	0	0	1	copy fasta	SCG2	chr2	223591940	223607361
SCG2_chr2_223591940_223607361	0/0	c0007	1854	5	0	3	0	2	0	copy fasta	SCG2	chr2	223591940	223607361
SCG2_chr2_223591940_223607361	0/0	c0008	1854	1	0	0	1	0	0	copy fasta	SCG2	chr2	223591940	223607361
SCG2_chr2_223591940_223607361	0/0	c0009	1854	1	0	0	1	0	0	copy fasta	SCG2	chr2	223591940	223607361
SCG3_chr15_51676503_51726026	1/1	c0001	1407	312	54	69	137	11	39	copy fasta	SCG3	chr15	51676503	51726026
SCG3_chr15_51676503_51726026	0/0	c0002	1407	34	6	1	27	0	0	copy fasta	SCG3	chr15	51676503	51726026
SCG3_chr15_51676503_51726026	0/0	c0003	1407	30	29	1	0	0	0	copy fasta	SCG3	chr15	51676503	51726026
SCG3_chr15_51676503_51726026	0/0	c0004	1407	14	0	5	7	0	2	copy fasta	SCG3	chr15	51676503	51726026
SCG3_chr15_51676503_51726026	0/0	c0005	1407	2	2	0	0	0	0	copy fasta	SCG3	chr15	51676503	51726026
SCG3_chr15_51676503_51726026	0/0	c0006	1407	2	0	2	0	0	0	copy fasta	SCG3	chr15	51676503	51726026
SCG3_chr15_51676503_51726026	0/0	c0007	1407	2	2	0	0	0	0	copy fasta	SCG3	chr15	51676503	51726026
SCG3_chr15_51676503_51726026	0/0	c0008	1407	2	0	0	2	0	0	copy fasta	SCG3	chr15	51676503	51726026
SCG3_chr15_51676503_51726026	0/0	c0009	1407	1	1	0	0	0	0	copy fasta	SCG3	chr15	51676503	51726026
SCG3_chr15_51676503_51726026	0/0	c0010	1407	1	0	0	0	1	0	copy fasta	SCG3	chr15	51676503	51726026
SCG3_chr15_51676503_51726026	0/0	c0011	1407	1	0	0	0	0	1	copy fasta	SCG3	chr15	51676503	51726026
SCG3_chr15_51676503_51726026	0/0	c0012	1407	1	0	0	1	0	0	copy fasta	SCG3	chr15	51676503	51726026
SCG5_chr15_32636710_32702092	0/1	c0001	639	411	92	74	182	16	46	copy fasta	SCG5	chr15	32636710	32702092
SCG5_chr15_32636710_32702092	0/0	c0002	639	4	4	0	0	0	0	copy fasta	SCG5	chr15	32636710	32702092
SCGB1A1_chr11_62414033_62428195	1/1	c0001	276	447	96	80	207	18	44	copy fasta	SCGB1A1	chr11	62414033	62428195
SCGB1A1_chr11_62414033_62428195	0/0	c0002	276	1	0	0	1	0	0	copy fasta	SCGB1A1	chr11	62414033	62428195
SCGB1C1_chr11_188078_199575	0/0	c0001	288	109	20	21	46	9	13	copy fasta	SCGB1C1	chr11	188078	199575
SCGB1C1_chr11_188078_199575	0/0	c0002	288	76	15	19	28	5	9	copy fasta	SCGB1C1	chr11	188078	199575
SCGB1C1_chr11_188078_199575	0/0	c0003	288	60	5	12	43	0	0	copy fasta	SCGB1C1	chr11	188078	199575
SCGB1C1_chr11_188078_199575	0/0	c0004	288	56	42	11	2	1	0	copy fasta	SCGB1C1	chr11	188078	199575
SCGB1C1_chr11_188078_199575	0/0	c0005	288	53	8	5	23	3	14	copy fasta	SCGB1C1	chr11	188078	199575
SCGB1C2_chr17_132569_144067	0/0	c0001	288	331	56	61	162	14	38	copy fasta	SCGB1C2	chr17	132569	144067
SCGB1C2_chr17_132569_144067	0/0	c0002	288	59	24	13	14	2	6	copy fasta	SCGB1C2	chr17	132569	144067
SCGB1C2_chr17_132569_144067	0/0	c0003	288	5	5	0	0	0	0	copy fasta	SCGB1C2	chr17	132569	144067
SCGB1C2_chr17_132569_144067	0/0	c0004	288	2	2	0	0	0	0	copy fasta	SCGB1C2	chr17	132569	144067
SCGB1C2_chr17_132569_144067	0/0	c0005	288	2	2	0	0	0	0	copy fasta	SCGB1C2	chr17	132569	144067
SCGB1C2_chr17_132569_144067	0/0	c0006	288	1	1	0	0	0	0	copy fasta	SCGB1C2	chr17	132569	144067
SCGB1C2_chr17_132569_144067	0/0	c0007	265	1	1	0	0	0	0	copy fasta	SCGB1C2	chr17	132569	144067
SCGB1C2_chr17_132569_144067	0/0	c0008	288	1	1	0	0	0	0	copy fasta	SCGB1C2	chr17	132569	144067
SCGB1D1_chr11_62185216_62198539	1/1	c0001	273	415	90	73	192	18	40	copy fasta	SCGB1D1	chr11	62185216	62198539
SCGB1D1_chr11_62185216_62198539	0/0	c0002	273	5	5	0	0	0	0	copy fasta	SCGB1D1	chr11	62185216	62198539
SCGB1D1_chr11_62185216_62198539	0/0	c0003	273	1	0	0	1	0	0	copy fasta	SCGB1D1	chr11	62185216	62198539
SCGB1D1_chr11_62185216_62198539	0/0	c0004	273	1	1	0	0	0	0	copy fasta	SCGB1D1	chr11	62185216	62198539
SCGB1D1_chr11_62185216_62198539	0/0	c0005	273	1	0	1	0	0	0	copy fasta	SCGB1D1	chr11	62185216	62198539
SCGB1D1_chr11_62185216_62198539	0/0	c0006	273	1	0	0	1	0	0	copy fasta	SCGB1D1	chr11	62185216	62198539
SCGB1D2_chr11_62237239_62249812	0/0	c0001	273	232	18	27	153	5	29	copy fasta	SCGB1D2	chr11	62237239	62249812
SCGB1D2_chr11_62237239_62249812	1/1	c0002	273	175	54	55	43	12	9	copy fasta	SCGB1D2	chr11	62237239	62249812
SCGB1D2_chr11_62237239_62249812	0/0	c0003	273	18	16	2	0	0	0	copy fasta	SCGB1D2	chr11	62237239	62249812
SCGB1D2_chr11_62237239_62249812	0/0	c0004	273	7	7	0	0	0	0	copy fasta	SCGB1D2	chr11	62237239	62249812
SCGB1D2_chr11_62237239_62249812	0/0	c0005	273	2	0	0	2	0	0	copy fasta	SCGB1D2	chr11	62237239	62249812
SCGB1D2_chr11_62237239_62249812	0/0	c0006	273	1	0	0	0	1	0	copy fasta	SCGB1D2	chr11	62237239	62249812
SCGB1D2_chr11_62237239_62249812	0/0	c0007	273	1	1	0	0	0	0	copy fasta	SCGB1D2	chr11	62237239	62249812
SCGB1D4_chr11_62291281_62304075	1/1	c0001	252	430	98	72	198	18	42	copy fasta	SCGB1D4	chr11	62291281	62304075
SCGB2A1_chr11_62203673_62218943	1/1	c0001	288	441	95	80	202	18	44	copy fasta	SCGB2A1	chr11	62203673	62218943