JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SCML1_chrX_17732493_17759985	0/0	c0002	990	3	0	1	2	0	0	copy fasta	SCML1	chrX	17732493	17759985
SCML1_chrX_17732493_17759985	0/0	c0003	990	1	0	0	1	0	0	copy fasta	SCML1	chrX	17732493	17759985
SCML2_chrX_18234313_18359688	1/1	c0001	2103	158	43	30	59	7	17	copy fasta	SCML2	chrX	18234313	18359688
SCML2_chrX_18234313_18359688	0/0	c0002	2103	84	18	13	48	2	3	copy fasta	SCML2	chrX	18234313	18359688
SCML2_chrX_18234313_18359688	0/0	c0003	2105	1	0	0	1	0	0	copy fasta	SCML2	chrX	18234313	18359688
SCML2_chrX_18234313_18359688	0/0	c0004	2103	1	1	0	0	0	0	copy fasta	SCML2	chrX	18234313	18359688
SCML2_chrX_18234313_18359688	0/0	c0005	2103	1	1	0	0	0	0	copy fasta	SCML2	chrX	18234313	18359688
SCML2_chrX_18234313_18359688	0/0	c0006	2103	1	0	1	0	0	0	copy fasta	SCML2	chrX	18234313	18359688
SCML2_chrX_18234313_18359688	0/0	c0007	2103	1	1	0	0	0	0	copy fasta	SCML2	chrX	18234313	18359688
SCML4_chr6_107697154_107829313	0/0	c0001	1245	127	42	23	43	5	14	copy fasta	SCML4	chr6	107697154	107829313
SCML4_chr6_107697154_107829313	0/0	c0002	1245	39	19	3	14	0	3	copy fasta	SCML4	chr6	107697154	107829313
SCML4_chr6_107697154_107829313	1/0	c0003	1245	25	17	3	4	0	0	copy fasta	SCML4	chr6	107697154	107829313
SCML4_chr6_107697154_107829313	0/1	c0004	1245	15	1	7	2	0	4	copy fasta	SCML4	chr6	107697154	107829313
SCML4_chr6_107697154_107829313	0/0	c0005	1245	12	0	0	12	0	0	copy fasta	SCML4	chr6	107697154	107829313
SCML4_chr6_107697154_107829313	0/0	c0006	1245	9	0	4	1	1	3	copy fasta	SCML4	chr6	107697154	107829313
SCML4_chr6_107697154_107829313	0/0	c0007	1245	5	3	2	0	0	0	copy fasta	SCML4	chr6	107697154	107829313
SCML4_chr6_107697154_107829313	0/0	c0008	1245	4	4	0	0	0	0	copy fasta	SCML4	chr6	107697154	107829313
SCML4_chr6_107697154_107829313	0/0	c0009	1245	3	0	0	3	0	0	copy fasta	SCML4	chr6	107697154	107829313
SCML4_chr6_107697154_107829313	0/0	c0010	1245	3	0	0	3	0	0	copy fasta	SCML4	chr6	107697154	107829313
SCML4_chr6_107697154_107829313	0/0	c0011	1245	2	2	0	0	0	0	copy fasta	SCML4	chr6	107697154	107829313
SCML4_chr6_107697154_107829313	0/0	c0012	1245	2	0	2	0	0	0	copy fasta	SCML4	chr6	107697154	107829313
SCML4_chr6_107697154_107829313	0/0	c0013	1245	1	1	0	0	0	0	copy fasta	SCML4	chr6	107697154	107829313
SCML4_chr6_107697154_107829313	0/0	c0014	1245	1	0	0	1	0	0	copy fasta	SCML4	chr6	107697154	107829313
SCML4_chr6_107697154_107829313	0/0	c0015	1245	1	1	0	0	0	0	copy fasta	SCML4	chr6	107697154	107829313
SCML4_chr6_107697154_107829313	0/0	c0016	1245	1	0	0	1	0	0	copy fasta	SCML4	chr6	107697154	107829313
SCN10A_chr3_38691807_38821217	0/0	c0001	5871	59	2	5	41	4	7	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/1	c0002	5871	59	5	22	20	2	9	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	c0003	5871	45	19	9	14	1	2	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	c0004	5871	27	8	4	14	0	1	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	c0005	5871	21	0	0	20	0	1	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	c0006	5871	19	17	0	0	0	2	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	c0007	5871	17	11	2	0	2	2	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	c0008	5871	10	0	7	0	3	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	c0009	5871	9	5	2	1	0	1	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	c0010	5871	8	0	0	8	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	c0011	5871	6	5	0	0	0	1	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	c0012	5871	5	5	0	0	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	c0013	5871	4	0	0	2	0	2	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	c0014	5871	4	4	0	0	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	c0015	5871	3	0	1	1	0	1	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	c0016	5871	3	0	0	3	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	c0017	5871	3	0	1	1	0	1	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	c0018	5871	3	2	1	0	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	c0019	5871	3	1	0	2	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	c0020	5871	3	0	0	2	0	1	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	c0021	5871	2	0	0	2	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	c0022	5871	2	0	0	0	2	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	c0023	5871	2	0	0	2	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	c0024	5871	2	0	0	2	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	c0025	5871	2	0	1	1	0	0	copy fasta	SCN10A	chr3	38691807	38821217