JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SCN10A_chr3_38691807_38821217	0/0	c0026	5871	2	2	0	0	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	c0027	5871	2	1	1	0	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	c0028	5871	2	0	0	0	0	2	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	c0029	5871	2	0	0	2	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	c0030	5871	2	0	2	0	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	c0031	5871	2	0	2	0	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	c0032	5871	2	0	0	0	0	2	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	c0033	5871	2	0	0	2	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	c0034	5871	2	0	0	2	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	c0035	5871	1	0	0	0	0	1	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	c0036	5871	1	0	0	1	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	c0037	5871	1	0	0	0	0	1	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	c0038	5871	1	1	0	0	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	c0039	5871	1	1	0	0	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	c0040	5871	1	0	0	1	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	c0041	5871	1	0	0	1	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	c0042	5871	1	0	0	1	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	c0043	5871	1	0	0	1	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	c0044	5871	1	0	0	1	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	c0045	5871	1	0	0	0	0	1	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	c0046	5871	1	1	0	0	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	c0047	5871	1	1	0	0	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	c0048	5871	1	1	0	0	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	c0049	5871	1	0	1	0	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	c0050	5871	1	0	1	0	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	c0051	5871	1	1	0	0	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	c0052	5871	1	0	1	0	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	1/0	c0053	5871	1	0	0	0	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	c0054	5871	1	0	0	0	0	1	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	c0055	5871	1	0	1	0	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	c0056	5871	1	0	0	1	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	c0057	5871	1	0	0	1	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	c0058	5871	1	0	1	0	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	c0059	5871	1	0	0	1	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	c0060	5871	1	1	0	0	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	c0061	5871	1	0	1	0	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	c0062	5871	1	0	0	1	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	c0063	5871	1	0	1	0	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	c0064	5871	1	0	0	1	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	c0065	5871	1	0	0	1	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	c0066	5871	1	0	0	0	0	1	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	c0067	5871	1	0	1	0	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN11A_chr3_38840764_39056944	0/1	c0001	5376	107	29	13	47	5	12	copy fasta	SCN11A	chr3	38840764	39056944
SCN11A_chr3_38840764_39056944	1/0	c0002	5376	70	6	8	43	4	8	copy fasta	SCN11A	chr3	38840764	39056944
SCN11A_chr3_38840764_39056944	0/0	c0003	5376	36	12	2	21	0	1	copy fasta	SCN11A	chr3	38840764	39056944
SCN11A_chr3_38840764_39056944	0/0	c0004	5376	30	2	13	12	2	1	copy fasta	SCN11A	chr3	38840764	39056944
SCN11A_chr3_38840764_39056944	0/0	c0005	5376	17	13	4	0	0	0	copy fasta	SCN11A	chr3	38840764	39056944
SCN11A_chr3_38840764_39056944	0/0	c0006	5376	15	7	1	3	2	2	copy fasta	SCN11A	chr3	38840764	39056944
SCN11A_chr3_38840764_39056944	0/0	c0007	5376	9	9	0	0	0	0	copy fasta	SCN11A	chr3	38840764	39056944
SCN11A_chr3_38840764_39056944	0/0	c0008	5376	4	0	2	0	1	1	copy fasta	SCN11A	chr3	38840764	39056944