JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SCN11A_chr3_38840764_39056944	0/0	c0009	5376	4	3	1	0	0	0	copy fasta	SCN11A	chr3	38840764	39056944
SCN11A_chr3_38840764_39056944	0/0	c0010	5376	3	1	0	2	0	0	copy fasta	SCN11A	chr3	38840764	39056944
SCN11A_chr3_38840764_39056944	0/0	c0011	5376	2	2	0	0	0	0	copy fasta	SCN11A	chr3	38840764	39056944
SCN11A_chr3_38840764_39056944	0/0	c0012	5376	2	2	0	0	0	0	copy fasta	SCN11A	chr3	38840764	39056944
SCN11A_chr3_38840764_39056944	0/0	c0013	5376	2	0	1	0	0	1	copy fasta	SCN11A	chr3	38840764	39056944
SCN11A_chr3_38840764_39056944	0/0	c0014	5376	2	0	0	2	0	0	copy fasta	SCN11A	chr3	38840764	39056944
SCN11A_chr3_38840764_39056944	0/0	c0015	5376	2	0	2	0	0	0	copy fasta	SCN11A	chr3	38840764	39056944
SCN11A_chr3_38840764_39056944	0/0	c0016	5376	1	1	0	0	0	0	copy fasta	SCN11A	chr3	38840764	39056944
SCN11A_chr3_38840764_39056944	0/0	c0017	5376	1	1	0	0	0	0	copy fasta	SCN11A	chr3	38840764	39056944
SCN11A_chr3_38840764_39056944	0/0	c0018	5376	1	0	0	1	0	0	copy fasta	SCN11A	chr3	38840764	39056944
SCN11A_chr3_38840764_39056944	0/0	c0019	5376	1	0	0	1	0	0	copy fasta	SCN11A	chr3	38840764	39056944
SCN11A_chr3_38840764_39056944	0/0	c0020	5376	1	0	0	1	0	0	copy fasta	SCN11A	chr3	38840764	39056944
SCN11A_chr3_38840764_39056944	0/0	c0021	5376	1	1	0	0	0	0	copy fasta	SCN11A	chr3	38840764	39056944
SCN11A_chr3_38840764_39056944	0/0	c0022	5376	1	0	0	1	0	0	copy fasta	SCN11A	chr3	38840764	39056944
SCN11A_chr3_38840764_39056944	0/0	c0023	5376	1	0	1	0	0	0	copy fasta	SCN11A	chr3	38840764	39056944
SCN11A_chr3_38840764_39056944	0/0	c0024	5376	1	1	0	0	0	0	copy fasta	SCN11A	chr3	38840764	39056944
SCN1A_chr2_165980813_166133020	0/1	c0001	6030	267	55	51	136	5	19	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	1/0	c0002	6030	50	12	8	20	3	6	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	c0003	6030	8	7	1	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	c0004	6030	5	4	1	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	c0005	6030	3	3	0	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	c0006	6030	2	2	0	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	c0007	6030	2	1	1	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	c0008	6030	2	0	0	2	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	c0009	6030	1	1	0	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	c0010	6030	1	1	0	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	c0011	6030	1	1	0	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	c0012	6030	1	1	0	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	c0013	6030	1	1	0	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	c0014	6030	1	1	0	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	c0015	6030	1	0	1	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	c0016	6030	1	1	0	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	c0017	6030	1	1	0	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	c0018	6030	1	0	0	0	0	1	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	c0019	6030	1	0	0	0	0	1	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	c0020	6030	1	0	0	0	0	1	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	c0021	6030	1	0	0	1	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	c0022	6030	1	0	0	1	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	c0023	6030	1	0	0	1	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	c0024	6030	1	0	1	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	c0025	6016	1	0	0	1	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1B_chr19_35025470_35045449	1/1	c0001	657	388	83	80	168	15	40	copy fasta	SCN1B	chr19	35025470	35045449
SCN1B_chr19_35025470_35045449	0/0	c0002	657	5	0	0	5	0	0	copy fasta	SCN1B	chr19	35025470	35045449
SCN1B_chr19_35025470_35045449	0/0	c0003	657	3	3	0	0	0	0	copy fasta	SCN1B	chr19	35025470	35045449
SCN1B_chr19_35025470_35045449	0/0	c0004	657	2	0	0	0	0	2	copy fasta	SCN1B	chr19	35025470	35045449
SCN1B_chr19_35025470_35045449	0/0	c0005	657	2	0	0	0	1	1	copy fasta	SCN1B	chr19	35025470	35045449
SCN1B_chr19_35025470_35045449	0/0	c0006	657	1	0	0	0	0	1	copy fasta	SCN1B	chr19	35025470	35045449
SCN1B_chr19_35025470_35045449	0/0	c0007	657	1	1	0	0	0	0	copy fasta	SCN1B	chr19	35025470	35045449
SCN1B_chr19_35025470_35045449	0/0	c0008	657	1	0	0	1	0	0	copy fasta	SCN1B	chr19	35025470	35045449
SCN1B_chr19_35025470_35045449	0/0	c0009	657	1	1	0	0	0	0	copy fasta	SCN1B	chr19	35025470	35045449