JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SCN4A_chr17_63933554_63977918	0/0	c0042	5511	1	1	0	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0043	5511	1	1	0	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0044	5511	1	1	0	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0045	5511	1	1	0	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0046	5511	1	1	0	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0047	5511	1	1	0	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0048	5511	1	0	0	1	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0049	5511	1	1	0	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0050	5511	1	1	0	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0051	5511	1	0	0	1	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0052	5511	1	0	0	1	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0053	5511	1	1	0	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0054	5511	1	0	0	1	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0055	5511	1	0	1	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0056	5511	1	0	0	0	1	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0057	5511	1	1	0	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0058	5511	1	0	0	1	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0059	5511	1	0	0	1	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0060	5511	1	1	0	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0061	5511	1	0	0	1	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0062	5511	1	0	0	1	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0063	5511	1	0	0	1	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0064	5511	1	0	0	1	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0065	5511	1	1	0	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0066	5511	1	0	0	0	0	1	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0067	5511	1	1	0	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0068	5511	1	1	0	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0069	5511	1	1	0	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0070	5511	1	0	1	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0071	5511	1	1	0	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0072	5511	1	0	0	0	1	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0073	5511	1	0	0	1	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0074	5511	1	0	0	0	0	1	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0075	5511	1	0	0	1	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0076	5511	1	1	0	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0077	5511	1	0	0	1	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0078	5511	1	1	0	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0079	5511	1	0	1	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0080	5511	1	1	0	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4B_chr11_118128377_118157823	1/1	c0001	687	428	89	74	202	17	44	copy fasta	SCN4B	chr11	118128377	118157823
SCN4B_chr11_118128377_118157823	0/0	c0002	687	10	2	4	1	1	2	copy fasta	SCN4B	chr11	118128377	118157823
SCN4B_chr11_118128377_118157823	0/0	c0003	687	2	0	0	2	0	0	copy fasta	SCN4B	chr11	118128377	118157823
SCN4B_chr11_118128377_118157823	0/0	c0004	687	2	0	0	0	0	2	copy fasta	SCN4B	chr11	118128377	118157823
SCN4B_chr11_118128377_118157823	0/0	c0005	687	1	0	0	1	0	0	copy fasta	SCN4B	chr11	118128377	118157823
SCN4B_chr11_118128377_118157823	0/0	c0006	687	1	0	1	0	0	0	copy fasta	SCN4B	chr11	118128377	118157823
SCN4B_chr11_118128377_118157823	0/0	c0007	687	1	1	0	0	0	0	copy fasta	SCN4B	chr11	118128377	118157823
SCN4B_chr11_118128377_118157823	0/0	c0008	328	1	0	1	0	0	0	copy fasta	SCN4B	chr11	118128377	118157823
SCN5A_chr3_38543062_38654687	0/0	c0001	6051	61	5	12	36	1	7	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/1	c0002	6051	50	3	5	28	3	10	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0003	6051	38	1	4	30	0	3	copy fasta	SCN5A	chr3	38543062	38654687