JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ATL2_chr2_38288954_38382273	0/0	c0003	1752	36	31	4	0	0	1	copy fasta	ATL2	chr2	38288954	38382273
ATL2_chr2_38288954_38382273	0/0	c0004	1752	16	15	1	0	0	0	copy fasta	ATL2	chr2	38288954	38382273
ATL2_chr2_38288954_38382273	0/0	c0005	1752	7	6	1	0	0	0	copy fasta	ATL2	chr2	38288954	38382273
ATL2_chr2_38288954_38382273	0/1	c0006	1752	5	1	2	1	0	0	copy fasta	ATL2	chr2	38288954	38382273
ATL2_chr2_38288954_38382273	0/0	c0007	1752	1	1	0	0	0	0	copy fasta	ATL2	chr2	38288954	38382273
ATL2_chr2_38288954_38382273	0/0	c0008	1752	1	1	0	0	0	0	copy fasta	ATL2	chr2	38288954	38382273
ATL2_chr2_38288954_38382273	0/0	c0009	1752	1	1	0	0	0	0	copy fasta	ATL2	chr2	38288954	38382273
ATL2_chr2_38288954_38382273	0/0	c0010	1752	1	0	1	0	0	0	copy fasta	ATL2	chr2	38288954	38382273
ATL2_chr2_38288954_38382273	0/0	c0011	1752	1	0	0	0	0	1	copy fasta	ATL2	chr2	38288954	38382273
ATL3_chr11_63619087_63676376	1/1	c0001	1626	234	78	55	57	10	32	copy fasta	ATL3	chr11	63619087	63676376
ATL3_chr11_63619087_63676376	0/0	c0002	1626	4	3	1	0	0	0	copy fasta	ATL3	chr11	63619087	63676376
ATL3_chr11_63619087_63676376	0/0	c0003	1626	2	0	0	0	0	2	copy fasta	ATL3	chr11	63619087	63676376
ATL3_chr11_63619087_63676376	0/0	c0004	1626	1	0	0	1	0	0	copy fasta	ATL3	chr11	63619087	63676376
ATL3_chr11_63619087_63676376	0/0	c0005	1626	1	1	0	0	0	0	copy fasta	ATL3	chr11	63619087	63676376
ATMIN_chr16_81030842_81052350	0/1	c0001	2472	234	33	52	116	9	23	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	c0002	2472	54	1	4	44	0	5	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	1/0	c0003	2472	21	18	2	0	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	c0004	2472	12	0	0	12	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	c0005	2469	12	4	1	7	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	c0006	2472	11	6	4	0	1	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	c0007	2472	10	10	0	0	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	c0008	2472	9	5	1	3	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	c0009	2472	7	7	0	0	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	c0010	2472	4	0	0	4	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	c0011	2472	3	1	0	1	0	1	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	c0012	2472	2	0	0	2	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	c0013	2472	1	1	0	0	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	c0014	2472	1	0	1	0	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	c0015	2472	1	0	1	0	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	c0016	2472	1	0	0	1	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	c0017	2472	1	1	0	0	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	c0018	2472	1	0	1	0	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	c0019	2472	1	0	0	0	0	1	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	c0020	2472	1	0	0	0	0	1	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	c0021	2472	1	1	0	0	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	c0022	2472	1	0	0	1	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	c0023	2472	1	0	0	1	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	c0024	2472	1	0	0	0	0	1	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	c0025	2472	1	0	1	0	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATM_chr11_108218067_108374102	1/1	c0001	9171	189	23	35	101	8	20	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	c0002	9171	16	13	3	0	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	c0003	9171	12	0	4	2	3	3	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	c0004	9171	11	10	1	0	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	c0005	9171	9	9	0	0	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	c0006	9171	9	0	0	6	0	3	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	c0007	9171	6	6	0	0	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	c0008	9171	6	6	0	0	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	c0009	9171	5	5	0	0	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	c0010	9171	5	3	2	0	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	c0011	9171	4	3	1	0	0	0	copy fasta	ATM	chr11	108218067	108374102